[Home] | [Total List]

[183894_at]

Description C17C3.3 /REP_DB=WormBase Gene ID /WP=CE04023 /TR=Q18061 /GB=AAK31417.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 37.6
(-2.5)
A 		44.8
(-2.2)
A 		27.3
(-3)
A 		158.5
(3)
P 		131
B 34.6
(-3)
A 		64
(-1.1)
A 		51.5
(-1.9)
A 		127.5
(3)
P 		93
C 42.9
(-1.6)
A 		44
(-1.5)
A 		27.8
(-3)
A 		93.8
(3)
P 		66
avr 38.4
(-2.8) 		50.9
(-2) 		35.5
(-3) 		126.6
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 60.5
(-1.2)
A 		7.2
(-2.9)
A 		3.3
(-3)
A 		87.9
(-0.4)
A 		128.3
(0.9)
A 		197.3
(3)
P 		194
B 24
(-2.1)
A 		37.6
(-1.4)
A 		6.5
(-3)
A 		84.8
(1)
A 		100.6
(1.8)
P 		123.3
(3)
P 		117
C 11.7
(-3)
A 		41.4
(-1.8)
A 		36.9
(-2)
A 		61.2
(-0.9)
A 		65.1
(-0.8)
A 		156.5
(3)
P 		145
avr 32.1
(-2.3) 		28.7
(-2.5) 		15.6
(-3) 		78
(-0.4) 		98
(0.4) 		159
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 13.7
(-0.5)
A 		9.7
(-2)
A 		7.1
(-3)
A 		23.2
(3)
P 		16
B 11
(-3)
A 		15.8
(-1.2)
A 		11.9
(-2.7)
A 		27.2
(3)
P 		16
C 14.2
(1.4)
A 		12.7
(-0)
A 		9.7
(-3)
A 		15.8
(3)
P 		6
avr 13
(-1.4) 		12.7
(-1.5) 		9.6
(-3) 		22.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 11.2
(-1.7)
A 		2.6
(-2.8)
A 		0.7
(-3)
A 		22.3
(-0.3)
A 		38.7
(1.8)
A 		48
(3)
P 		47
B 8.3
(-2.1)
A 		12.5
(-1.5)
A 		1.6
(-3)
A 		22.5
(-0.2)
A 		40.9
(2.3)
P 		46
(3)
P 		44
C 4.3
(-3)
A 		12.6
(-2)
A 		9.4
(-2.4)
A 		12.3
(-2)
A 		21.1
(-0.9)
A 		52.4
(3)
P 		48
avr 7.9
(-2.5) 		9.2
(-2.3) 		3.9
(-3) 		19
(-1) 		33.6
(1) 		48.8
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5899
Sequence Type Exemplar sequence
Representative Public ID C17C3.3 NCBI
Target Description C17C3.3 /REP_DB=WormBase Gene ID /WP=CE04023 /TR=Q18061 /GB=AAK31417.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062671(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062671 NCBI Caenorhabditis elegans C17C3.3 (C17C3.3) mRNA, complete cds. 10/11 None
GENEFINDER00000005299 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5561733:5563658:1 10/11 None
C17C3.3 ENSEMBL cdna:known chromosome:CEL140:II:5561733:5563493:1 gene:C17C3.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005293 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5561730-5563525(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17C3.3
Entrez Gene 182714 Entrez gene
SwissProt Q18061 EMBL-EBI
WormBase CE34698 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6637 acyl-CoA metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16291 acyl-CoA thioesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31417 Hypothetical protein C17C3.3 [Caenorhabditis elegans] ref|NP_495072.2| C17C3.3 [Caenorhabditis elegans] 0.0
blast CAE59139 Hypothetical protein CBG02441 [Caenorhabditis briggsae] 1.0E-140
blast AAK31417 Hypothetical protein C17C3.3 [Caenorhabditis elegans] ref|NP_495072.2| C17C3.3 [Caenorhabditis elegans] 1.0E-134
blast CAE59139 Hypothetical protein CBG02441 [Caenorhabditis briggsae] 2.0E-99
blast AAK31429 Hypothetical protein C17C3.1b [Caenorhabditis elegans] ref|NP_495079.1| C17C3.1b [Caenorhabditis elegans] 2.0E-89
blast AAK31429 Hypothetical protein C17C3.1b [Caenorhabditis elegans] ref|NP_495079.1| C17C3.1b [Caenorhabditis elegans] 7.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 1.7E-11
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 7.9E-10
Sequence
Target Sequence 
>C. ELEGANS:183894_AT
ttgtatccgcggtgatctactcaacgcctgcaatatacaaagtgaaaagaataaaagacg
gaaaaacatttatcatacgaacggttgaagctgttcaaaatgatcgaatttgttttgtac
ttcaagtttcatttcatatttcagaaaaaagtgggatgatacatcaggatataatgccta
aagttccaaatcccgaaagcttgatgagtatgaaagatgctgtaatttcaacaaagaagc
ttgtgaacgatggtggacttgttctgaaaccagcaatgttgcataggcttatggtattgg
ataacaaagcatttgttattaataatgatatgtttgaagcaagatgtacaaatctcggaa
attggtatggatattgcagtgatttgaagcatcaggcaagagtttggatgagaacgagag
agcggttgaatactggcgataaaaggcttcacaggtggctcctcgcttgcatgagtgacg
ctattctccttcctgcaggcatgtcagcgcatttttcagcaaccgttactgtcgcgaata
cggagaaggagagtgttctcctattacgactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTATCCGCGGTGATCTACTCAAC 352 707 218 Antisense
GATCTACTCAACGCCTGCAATATAC 279 419 231 Antisense
TAATGCCTAAAGTTCCAAATCCCGA 19 635 389 Antisense
GGTGGACTTGTTCTGAAACCAGCAA 483 499 469 Antisense
GAGAGCGGTTGAATACTGGCGATAA 277 395 635 Antisense
TAAAAGGCTTCACAGGTGGCTCCTC 495 639 657 Antisense
CTCCTCGCTTGCATGAGTGACGCTA 280 235 676 Antisense
TTCCTGCAGGCATGTCAGCGCATTT 460 699 707 Antisense
TCAGCGCATTTTTCAGCAACCGTTA 456 625 721 Antisense
AGCAACCGTTACTGTCGCGAATACG 471 75 735 Antisense
GAGAGTGTTCTCCTATTACGACTGT 449 395 766 Antisense
Sequence Source Affymetrix Proprietary Database