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[183893_s_at]

Description C08F1.6 /REP_DB=WormBase Gene ID /WP=CE08021 /TR=O17177 /GB=AAK31401.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 3.9
(-3)
A 		8
(0.2)
A 		11.5
(3)
A 		7.9
(0.2)
A 		8
B 8
(-2.3)
A 		1.8
(-3)
A 		4.7
(-2.7)
A 		51.8
(3)
A 		50
C 4.7
(-2.9)
A 		5
(-2.8)
A 		3.4
(-3)
A 		63.2
(3)
A 		60
avr 5.5
(-2.9) 		4.9
(-3) 		6.5
(-2.7) 		41
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 13.4
(-2.7)
A 		3.7
(-3)
A 		7.5
(-2.9)
A 		12.2
(-2.7)
A 		28.9
(-2.2)
A 		198.3
(3)
P 		195
B 6.4
(-2.9)
A 		4.8
(-2.9)
A 		2.5
(-3)
A 		2.2
(-3)
A 		45.2
(-1.7)
A 		206.1
(3)
P 		204
C 26.4
(-2.4)
A 		6.4
(-3)
A 		13.6
(-2.8)
A 		6.9
(-3)
A 		26.6
(-2.4)
A 		224
(3)
P 		218
avr 15.4
(-2.7) 		5
(-3) 		7.9
(-2.9) 		7.1
(-2.9) 		33.6
(-2.2) 		209.5
(3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.4
(-2.3)
A 		1.7
(-1.3)
A 		3
(3)
A 		1.2
(-3)
A 		2
B 2.5
(-1.8)
A 		0.4
(-3)
A 		1.1
(-2.6)
A 		11
(3)
A 		11
C 1.6
(-2.7)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		10.6
(3)
A 		9
avr 1.8
(-2.4) 		1.2
(-3) 		1.8
(-2.4) 		7.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 2.5
(-2.8)
A 		1.3
(-3)
A 		1.6
(-3)
A 		3.1
(-2.8)
A 		8.7
(-2.1)
A 		48.3
(3)
P 		47
B 2.2
(-2.9)
A 		1.6
(-2.9)
A 		0.6
(-3)
A 		0.6
(-3)
A 		18.4
(-1.6)
A 		76.9
(3)
P 		76
C 9.8
(-2.3)
A 		2
(-3)
A 		3.5
(-2.8)
A 		1.4
(-3)
A 		8.6
(-2.4)
A 		75
(3)
P 		74
avr 4.8
(-2.7) 		1.6
(-3) 		1.9
(-3) 		1.7
(-3) 		11.9
(-2.1) 		66.7
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183893_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5231
Sequence Type Exemplar sequence
Representative Public ID C08F1.6 NCBI
Target Description C08F1.6 /REP_DB=WormBase Gene ID /WP=CE08021 /TR=O17177 /GB=AAK31401.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061677 NCBI Caenorhabditis elegans C08F1.6 (C08F1.6) mRNA, complete cds. 11/11 None
C08F1.6 ENSEMBL cdna:known chromosome:CEL140:II:1787286:1788158:-1 gene:C08F1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012052 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1787284-1788107(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F1.6
Entrez Gene 173550 Entrez gene
SwissProt O17177 EMBL-EBI
WormBase CE08021 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31401 Hypothetical protein C08F1.6 [Caenorhabditis elegans] ref|NP_494078.1| C08F1.6 [Caenorhabditis elegans] 1.0E-147
blast AAM98051 Hypothetical protein C08F1.10 [Caenorhabditis elegans] ref|NP_872027.1| C08F1.10 [Caenorhabditis elegans] 4.0E-61
blast AAK31515 Hypothetical protein F36H5.4 [Caenorhabditis elegans] ref|NP_494072.1| F36H5.4 [Caenorhabditis elegans] 9.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494078.1 6 5-27,47-64,84-106,111-133,156-175,190-212
C08F1.6 6 5-27,47-64,84-106,111-133,156-175,190-212
Sequence
Target Sequence 
>C. ELEGANS:183893_S_AT
caattttcttcgcctgtgggtgtgttttggcaattgtactgctcaatcctcgattttacg
ctagagagaagtacacaataaatagcttctgctcgacacgatatttgatggcggcaggga
tgatttgcattaatatgctactcaccggaaatagcatttttagtttatattgcagttggg
caagggcaatcattgaagctgtaatcatatctatcttatgctgtttggcgtacataagta
tcaacatttgccgtgaaaaagaatcgccaattcactacagattgtcgaatactacaacgg
tcactaatgcacagaaactaatcatgatcctcttcctcgccatcttcggagcattcaaca
tatgttctagcttcattgaactgcgtcaattcccagatgagtacacgggattggggtttt
tctacacaactcgattcatctgccccatcctctatatcttggcctataactccgaggtgc
ttacattcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTTCTTCGCCTGTGGGTGTGT 631 179 161 Antisense
GGCAATTGTACTGCTCAATCCTCGA 120 535 189 Antisense
GCTCAATCCTCGATTTTACGCTAGA 582 301 201 Antisense
AATAGCTTCTGCTCGACACGATATT 421 173 241 Antisense
GACACGATATTTGATGGCGGCAGGG 91 367 255 Antisense
GCATTAATATGCTACTCACCGGAAA 460 307 287 Antisense
ATATCTATCTTATGCTGTTTGGCGT 172 21 367 Antisense
ACTACAACGGTCACTAATGCACAGA 456 99 451 Antisense
GAAACTAATCATGATCCTCTTCCTC 194 357 474 Antisense
CATCCTCTATATCTTGGCCTATAAC 541 209 606 Antisense
ATAACTCCGAGGTGCTTACATTCAG 544 23 626 Antisense
Sequence Source Affymetrix Proprietary Database