[Home] | [Total List]

[183892_at]

Description C10A4.6 /REP_DB=WormBase Gene ID /WP=CE02474 /TR=Q17888 /GB=AAC46520.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 7.3
(-3)
A 		24.2
(3)
A 		15.7
(-0)
A 		10.5
(-1.9)
A 		17
B 8.4
(-1.7)
A 		22.8
(3)
A 		11.4
(-0.8)
A 		4.6
(-3)
A 		18
C 27.8
(-1.8)
A 		12
(-3)
A 		13.1
(-2.9)
A 		94
(3)
A 		82
avr 14.5
(-2.7) 		19.7
(-1.4) 		13.4
(-3) 		36.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 15.8
(-1.5)
A 		13.2
(-2.4)
A 		13.6
(-2.2)
A 		11.3
(-3)
A 		29
(3)
A 		17.1
(-1)
A 		18
B 7.3
(-1.5)
A 		6
(-3)
A 		10
(1.6)
A 		8.5
(-0.1)
A 		11.2
(3)
A 		6.8
(-2.1)
A 		5
C 4.9
(-3)
A 		34
(3)
A 		5.8
(-2.8)
A 		30.2
(2.2)
A 		16.2
(-0.7)
A 		8.3
(-2.3)
A 		29
avr 9.3
(-3) 		17.7
(2.3) 		9.8
(-2.7) 		16.7
(1.7) 		18.8
(3) 		10.7
(-2.1) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.6
(-1.2)
A 		5.2
(3)
A 		4.1
(1.2)
A 		1.5
(-3)
A 		4
B 2.7
(-0.8)
A 		5.6
(3)
A 		2.6
(-0.9)
A 		1
(-3)
A 		5
C 9.2
(-0.2)
A 		3.5
(-3)
A 		4.6
(-2.5)
A 		15.9
(3)
A 		12
avr 4.8
(-0.4) 		4.8
(-0.4) 		3.8
(-3) 		6.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.9
(-3)
A 		4.7
(-1.2)
A 		3
(-2.9)
A 		2.9
(-3)
A 		8.8
(3)
A 		4.2
(-1.7)
A 		6
B 2.5
(-1.8)
A 		2
(-3)
A 		2.4
(-2)
A 		2.3
(-2.3)
A 		4.5
(3)
A 		2.5
(-1.8)
A 		3
C 1.8
(-2.8)
A 		10.4
(3)
A 		1.5
(-3)
A 		6.1
(0.1)
A 		5.2
(-0.5)
A 		2.8
(-2.1)
A 		9
avr 2.4
(-2.8) 		5.7
(2.2) 		2.3
(-3) 		3.8
(-0.7) 		6.2
(3) 		3.2
(-1.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17103
Sequence Type Exemplar sequence
Representative Public ID C10A4.6 NCBI
Target Description C10A4.6 /REP_DB=WormBase Gene ID /WP=CE02474 /TR=Q17888 /GB=AAC46520.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076848 NCBI Caenorhabditis elegans C10A4.6 (C10A4.6) mRNA, complete cds. 11/11 None
C10A4.6 ENSEMBL cdna:known chromosome:CEL140:X:7390545:7392221:1 gene:C10A4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027704 8/11 Cross Hyb Matching Probes None
GENEFINDER00000027719 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7390543-7392220(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10A4.6
Entrez Gene 182487 Entrez gene
SwissProt Q17888 EMBL-EBI
WormBase CE02474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46520 Hypothetical protein C10A4.6 [Caenorhabditis elegans] ref|NP_509249.1| C10A4.6 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509249.1 2 15-37,77-96
C10A4.6 2 15-37,77-96
Sequence
Target Sequence 
>C. ELEGANS:183892_AT
tgactttacgtctaactcttctcatattttcagttgccattgtttgcctctatatttcca
ttttatatctggagaagacctatccgagagtcgatccacactacccgcgaaaactggtct
acatttgtttccccaaacaagacagctttgttgctacctacatgggtatcatacgtacct
tcgatctggtcttaagtgtattcttggctgttcagtgtgtcgtattggggaggtattttt
tgctcgaaaagttttatgctgaatttgattttaaagacactcaactcgacttcatcctca
gtgtcagtgatgatgattattcacacatgatctctaaatattctttaactacgcggtata
tgaaaaatgcttctttggccagccgctttaatttccggtgttgtcagtattgtgctacga
aaaacatgaagttgatgaatcaaatctgtcgaagaaacgggaaaaagcgcaccctcaaaa
catatcgcgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTTTACGTCTAACTCTTCTCAT 320 571 56 Antisense
TTCAGTTGCCATTGTTTGCCTCTAT 196 687 84 Antisense
TATCCGAGAGTCGATCCACACTACC 569 657 136 Antisense
CACACTACCCGCGAAAACTGGTCTA 566 193 152 Antisense
TGGTCTACATTTGTTTCCCCAAACA 361 549 170 Antisense
GACAGCTTTGTTGCTACCTACATGG 277 367 196 Antisense
TCATACGTACCTTCGATCTGGTCTT 65 621 224 Antisense
GGCTGTTCAGTGTGTCGTATTGGGG 175 537 261 Antisense
TCGACTTCATCCTCAGTGTCAGTGA 629 601 341 Antisense
GCCAGCCGCTTTAATTTCCGGTGTT 571 277 433 Antisense
CGCACCCTCAAAACATATCGCGCCG 216 255 523 Antisense
Sequence Source Affymetrix Proprietary Database