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[183891_at]

Description F29B9.4 /REP_DB=WormBase Gene ID /WP=CE27146 /TR=Q9GYI4 /GB=AAF99922.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 82      6grp_total > 75      4grp_total > 40      6grp_highest_sub > In      6grp_cgc > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 243.7
(-0.8)
P 		203.7
(-3)
P 		314.2
(3)
P 		251.9
(-0.4)
P 		111
B 235.3
(-0.4)
P 		222.1
(-3)
P 		253
(3)
P 		246.4
(1.7)
P 		31
C 259.1
(-0.1)
P 		279.1
(3)
P 		252.1
(-1.1)
P 		239.8
(-3)
P 		39
avr 246
(-1.3) 		235
(-3) 		273.1
(3) 		246
(-1.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 283.1
(-3)
P 		299.7
(-2.6)
P 		367.6
(-1.1)
P 		414.3
(-0)
P 		380
(-0.8)
P 		549.3
(3)
P 		266
B 315.3
(-3)
P 		359.8
(-1.1)
P 		391.7
(0.2)
P 		395.7
(0.4)
P 		362.3
(-1)
P 		456.8
(3)
P 		142
C 290.7
(-3)
P 		339.6
(-2)
P 		379.2
(-1.1)
P 		392.4
(-0.9)
P 		362.6
(-1.5)
P 		574.7
(3)
P 		284
avr 296.4
(-3) 		333
(-2) 		379.5
(-0.8) 		400.8
(-0.3) 		368.3
(-1.1) 		526.9
(3) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 88.7
(3)
P 		44.2
(-2.2)
P 		82.1
(2.2)
P 		36.9
(-3)
P 		52
B 75
(3)
P 		54.9
(-2.4)
P 		58.6
(-1.4)
P 		52.5
(-3)
P 		23
C 85.8
(2.7)
P 		80.2
(2)
P 		87.9
(3)
P 		40.4
(-3)
P 		48
avr 83.2
(3) 		59.8
(-0.5) 		76.2
(1.9) 		43.3
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 52.2
(-3)
P 		106.6
(1)
P 		80
(-1)
P 		105.1
(0.9)
P 		114.7
(1.6)
P 		133.7
(3)
P 		82
B 109.7
(-1.8)
P 		119.8
(-1)
P 		95.1
(-3)
P 		104.8
(-2.2)
P 		147.2
(1.2)
P 		170.3
(3)
P 		75
C 107.8
(-1.5)
P 		103.6
(-1.7)
P 		96.5
(-2.1)
P 		78.9
(-3)
P 		117.3
(-1)
P 		192.4
(3)
P 		114
avr 89.9
(-3) 		110
(-1.4) 		90.5
(-3) 		96.3
(-2.5) 		126.4
(-0.1) 		165.5
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10376
Sequence Type Exemplar sequence
Representative Public ID F29B9.4 NCBI
Target Description F29B9.4 /REP_DB=WormBase Gene ID /WP=CE27146 /TR=Q9GYI4 /GB=AAF99922.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068205 NCBI Caenorhabditis elegans PhosphatidylSerine Receptor family member (psr-1) (psr-1) mRNA, complete cds. 11/11 None
SNAP00000034765 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4653284:4655705:1 11/11 None
GENEFINDER00000034775 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4652450:4655705:1 11/11 None
F29B9.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:4653374:4657535:1 gene:F29B9.4 11/11 None
F29B9.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:4653376:4657535:1 gene:F29B9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4653390-4655711(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol psr-1
Ensembl F29B9.4
Entrez Gene 177229 Entrez gene
SwissProt Q9GYI4 EMBL-EBI
WormBase CE27146 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260798_AT transcription factor jumonji (jmjC) domain-containing protein at
CANINE_2:CFA.17114.1.S1_AT similar to phosphatidylserine receptor cfa
CANINE_2:CFAAFFX.8648.1.S1_S_AT similar to phosphatidylserine receptor cfa
DROSOPHILA_2:1640943_AT phosphatidylserine receptor dm
DROSGENOME1:154344_AT phosphatidylserine receptor dm
CHICKEN:GGAAFFX.11482.1.S1_S_AT phosphatidylserine receptor gga
CHICKEN:GGAAFFX.20273.1.S1_S_AT phosphatidylserine receptor gga
HG-U95AV2:35849_AT phosphatidylserine receptor hs
HG-U133_PLUS_2:215233_AT phosphatidylserine receptor hs
HG-U133A_2:215233_AT phosphatidylserine receptor hs
HG-U133A:215233_AT phosphatidylserine receptor hs
HU35KSUBC:RC_AA459945_AT phosphatidylserine receptor hs
U133_X3P:HS2.72660.1.S1_3P_S_AT phosphatidylserine receptor hs
U133_X3P:HS.72660.1.S1_3P_AT phosphatidylserine receptor hs
U133_X3P:HS.72660.0.S1_3P_AT phosphatidylserine receptor hs
HG-U133_PLUS_2:1552629_A_AT phosphatidylserine receptor hs
HG-U133A_2:212722_S_AT phosphatidylserine receptor hs
HG-U133_PLUS_2:212722_S_AT phosphatidylserine receptor hs
HG-U133A:212722_S_AT phosphatidylserine receptor hs
HG-U133A_2:212723_AT phosphatidylserine receptor hs
HG-U133_PLUS_2:212723_AT phosphatidylserine receptor hs
HG-U133A:212723_AT phosphatidylserine receptor hs
HG-U95AV2:35850_AT phosphatidylserine receptor hs
HG-U95AV2:35851_G_AT phosphatidylserine receptor hs
HG-U95B:44301_AT Phosphatidylserine receptor hs
HU35KSUBD:RC_AA481795_AT Phosphatidylserine receptor hs
MOUSE430A_2:1420056_S_AT phosphatidylserine receptor mm
MOE430A:1420056_S_AT phosphatidylserine receptor mm
MOUSE430_2:1420056_S_AT phosphatidylserine receptor mm
MU11KSUBB:Z31236_S_AT phosphatidylserine receptor mm
MG-U74AV2:95486_AT phosphatidylserine receptor mm
MG-U74BV2:105643_AT phosphatidylserine receptor mm
MOE430A:1454109_A_AT phosphatidylserine receptor mm
MOUSE430A_2:1454109_A_AT phosphatidylserine receptor mm
MOUSE430_2:1454109_A_AT phosphatidylserine receptor mm
MG-U74CV2:129295_AT RIKEN cDNA 1110005A03 gene (1110005A03Rik), mRNA mm
MOE430A:1420057_AT MKIAA0585 protein mm
MOUSE430A_2:1420057_AT MKIAA0585 protein mm
MOUSE430_2:1420057_AT MKIAA0585 protein mm
MOE430B:1441602_AT RIKEN cDNA 1110005A03 gene (1110005A03Rik), mRNA mm
MOUSE430_2:1441602_AT RIKEN cDNA 1110005A03 gene (1110005A03Rik), mRNA mm
MU19KSUBA:TC14353_AT MKIAA0585 protein mm
MU19KSUBC:TC37493_AT RIKEN cDNA 1110005A03 gene (1110005A03Rik), mRNA mm
MU19KSUBC:TC37493_G_AT RIKEN cDNA 1110005A03 gene (1110005A03Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast NP_500606 PhosphatidylSerine Receptor family member (psr-1) [Caenorhabditis elegans] gb|AAF99922.2| Phosphatidylserine receptor family protein 1 [Caenorhabditis elegans] sp|Q9GYI4|PTDSR_CAEEL Protein psr-1 (Phosphatidylserine receptor 1) 0.0
blast Q623U2 Protein psr-1 emb|CAE58560.1| Hypothetical protein CBG01722 [Caenorhabditis briggsae] 0.0
blast T29931 hypothetical protein F29B9.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 4.5E-27
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 4.5E-27
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 4.5E-27
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.0026
Sequence
Target Sequence 
>C. ELEGANS:183891_AT
aaacgatgggttctgattcctccgattgcaccacgtgatcttgtgaaaccgatggctcat
gagaagggaaaacatccggatgaaggaatcacgtggtttcagacggtctataaacgagtt
cgaagtcccagttggccgaaggaatacgcaccgattgaatgtcgtcaaggaccgggagag
actatgtttgtaccgtctggatggtggcatgttgttatcaatgaggaatacacaattgca
gtgactcacaactattgctctgtcgagaatttgcatcttgtatggccgaaaactgtgaag
ggaaggcccaagttgagcaagcattgggtcaaaaggctcacagagcaacgtcccgagctt
ctcgaaattatcaaatcggcttctgaaatcccgctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGATGGGTTCTGATTCCTCCGA 173 125 484 Antisense
TCCGATTGCACCACGTGATCTTGTG 400 593 504 Antisense
GAATCACGTGGTTTCAGACGGTCTA 433 327 569 Antisense
AGTTCGAAGTCCCAGTTGGCCGAAG 78 63 600 Antisense
GTTGGCCGAAGGAATACGCACCGAT 530 433 614 Antisense
GTTTGTACCGTCTGGATGGTGGCAT 649 451 669 Antisense
TGCAGTGACTCACAACTATTGCTCT 235 579 720 Antisense
GGAAGGCCCAAGTTGAGCAAGCATT 179 533 784 Antisense
AAAGGCTCACAGAGCAACGTCCCGA 556 119 815 Antisense
CAACGTCCCGAGCTTCTCGAAATTA 437 185 829 Antisense
AAATCGGCTTCTGAAATCCCGCTCT 700 117 856 Antisense
Sequence Source Affymetrix Proprietary Database