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[183890_at]

Description Y70C5C.1 /REP_DB=WormBase Gene ID /WP=CE16673 /TR=O62499 /GB=CAB16537.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      4grp_high_8_8 > 39      6grp_total > 20      4grp_total > 32      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 23.2
(-3)
A 		90.8
(3)
P 		81.2
(2.1)
P 		80.5
(2.1)
P 		68
B 39.5
(-3)
P 		52.1
(-1.9)
P 		109.5
(3)
P 		58.6
(-1.4)
P 		70
C 24.4
(-3)
M 		77.8
(1.5)
P 		80.8
(1.8)
P 		95.3
(3)
P 		71
avr 29
(-3) 		73.6
(1.4) 		90.5
(3) 		78.1
(1.8) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 18.8
(-3)
A 		97.4
(0.3)
P 		163
(3)
P 		59.7
(-1.3)
P 		73.4
(-0.7)
P 		20.9
(-2.9)
A 		144
B 47.2
(-2)
P 		127.7
(3)
P 		111.2
(2)
P 		93.2
(0.9)
P 		50.6
(-1.7)
P 		30.3
(-3)
P 		97
C 18.5
(-3)
A 		115.4
(2.6)
P 		122.2
(3)
P 		74.7
(0.3)
P 		58.4
(-0.7)
P 		41.3
(-1.7)
P 		104
avr 28.2
(-3) 		113.5
(1.9) 		132.1
(3) 		75.9
(-0.2) 		60.8
(-1.1) 		30.8
(-2.8) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 8.4
(-3)
A 		19.7
(2.3)
P 		21.2
(3)
P 		11.8
(-1.4)
P 		13
B 12.6
(-3)
P 		12.9
(-2.8)
P 		25.4
(3)
P 		12.5
(-3)
P 		13
C 8.1
(-3)
M 		22.4
(1.3)
P 		28.2
(3)
P 		16.1
(-0.6)
P 		20
avr 9.7
(-3) 		18.3
(0.4) 		24.9
(3) 		13.5
(-1.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3.5
(-3)
A 		34.6
(2.8)
P 		35.5
(3)
P 		15.1
(-0.8)
P 		22.1
(0.5)
P 		5.1
(-2.7)
A 		32
B 16.4
(-2)
P 		42.5
(3)
P 		27
(0)
P 		24.7
(-0.4)
P 		20.5
(-1.2)
P 		11.3
(-3)
P 		31
C 6.9
(-3)
A 		35.2
(3)
P 		31.1
(2.1)
P 		15
(-1.3)
P 		18.9
(-0.5)
P 		13.8
(-1.5)
P 		28
avr 8.9
(-3) 		37.4
(3) 		31.2
(1.7) 		18.3
(-1) 		20.5
(-0.6) 		10.1
(-2.7) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12765
Sequence Type Exemplar sequence
Representative Public ID Y70C5C.1 NCBI
Target Description Y70C5C.1 /REP_DB=WormBase Gene ID /WP=CE16673 /TR=O62499 /GB=CAB16537.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074825 NCBI Caenorhabditis elegans Y70C5C.1 (Y70C5C.1) mRNA, complete cds. 11/11 None
SNAP00000034980 ENSEMBL cdna:SNAP chromosome:CEL140:V:16705961:16706952:1 11/11 None
GENEFINDER00000034988 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16705961:16707385:1 11/11 None
Y70C5C.1 ENSEMBL cdna:known chromosome:CEL140:V:16702790:16706990:1 gene:Y70C5C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16705960-16706952(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y70C5C.1
Entrez Gene 190566 Entrez gene
SwissProt O62499 EMBL-EBI
WormBase CE37861 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19842_AT peptidase M16 family protein / insulinase family protein at
ATH1-121501:260554_AT peptidase M16 family protein / insulinase family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16537 Hypothetical protein Y70C5C.1 [Caenorhabditis elegans] emb|CAI46605.1| Hypothetical protein Y70C5C.1 [Caenorhabditis elegans] ref|NP_507226.2| Y70C5C.1 [Caenorhabditis elegans] 0.0
blast AAM45374 Hypothetical protein F44E7.4b [Caenorhabditis elegans] ref|NP_741542.1| F44E7.4b [Caenorhabditis elegans] 0.0
blast AAO12429 Hypothetical protein F44E7.4c [Caenorhabditis elegans] ref|NP_504514.2| F44E7.4c [Caenorhabditis elegans] 0.0
blast CAB16537 Hypothetical protein Y70C5C.1 [Caenorhabditis elegans] emb|CAI46605.1| Hypothetical protein Y70C5C.1 [Caenorhabditis elegans] ref|NP_507226.2| Y70C5C.1 [Caenorhabditis elegans] 1.0E-162
blast CAB16537 Hypothetical protein Y70C5C.1 [Caenorhabditis elegans] emb|CAI46605.1| Hypothetical protein Y70C5C.1 [Caenorhabditis elegans] ref|NP_507226.2| Y70C5C.1 [Caenorhabditis elegans] 1.0E-159
blast AAO12429 Hypothetical protein F44E7.4c [Caenorhabditis elegans] ref|NP_504514.2| F44E7.4c [Caenorhabditis elegans] 1.0E-132
blast AAM45374 Hypothetical protein F44E7.4b [Caenorhabditis elegans] ref|NP_741542.1| F44E7.4b [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 3.7E-31
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 3.5E-20
Pfam IPR001431 EMBL-EBI Peptidase M16, insulinase-like 1.3E-60
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 1.1E-15
Sequence
Target Sequence 
>C. ELEGANS:183890_AT
atcaagaatctcatcaccgagccggctttcgatactctcagaactaaagagtcattgggt
tatattgtttggactagaacacactttaactgcggaactgttgctctccagatccttgtt
caaggaccaaaaagcgttgatcacgttcttgagcgcattgaagcatttctggagtctgtt
cgtaaggagattgttgagatgccacaagaagagtttgaaaatcgagtttcgggtttgatt
gctcaacttgaagaaaaaccaaagacgctgagctgcagattcaaaaaattctgggatgag
attgagtgccgacagtataatttcacacgaattgaagaagatgtagaacttctgaaaact
atcaaaaaagaagatgttattgcactcttcgataaaaaaatccgcaagggtgctgcagaa
cggaggaagcttgctgtcattgtccatggaaaaagcgaagaccgagcggctgtcaacgag
atcatcaagaaacatttggaagacggtaaaaaaaagaaggaggttctctatttggatcag
ctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAGAATCTCATCACCGAGCCGG 111 27 292 Antisense
CGGCTTTCGATACTCTCAGAACTAA 219 243 314 Antisense
GGACTAGAACACACTTTAACTGCGG 663 523 362 Antisense
TAACTGCGGAACTGTTGCTCTCCAG 431 639 378 Antisense
TGCTCTCCAGATCCTTGTTCAAGGA 553 581 393 Antisense
GAAGCATTTCTGGAGTCTGTTCGTA 270 341 451 Antisense
CGAGTTTCGGGTTTGATTGCTCAAC 91 249 514 Antisense
AATCCGCAAGGGTGCTGCAGAACGG 386 157 690 Antisense
GGAAGCTTGCTGTCATTGTCCATGG 283 531 716 Antisense
ACCGAGCGGCTGTCAACGAGATCAT 533 89 752 Antisense
GAGGTTCTCTATTTGGATCAGCTGC 463 403 811 Antisense
Sequence Source Affymetrix Proprietary Database