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[183889_s_at]

Description D1022.7 /REP_DB=WormBase Gene ID /WP=CE02581 /TR=Q18930 /GB=AAB93340.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 82      6grp_total > 68      4grp_total > 31      6grp_highest_sub > Da      6grp_cgc > 39      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 367.8
(3)
P 		209.7
(-3)
P 		241.6
(-1.8)
P 		310.8
(0.8)
P 		158
B 438.8
(3)
P 		247.3
(-3)
P 		294.7
(-1.5)
P 		365.5
(0.7)
P 		192
C 362.1
(3)
P 		186
(-3)
P 		289
(0.5)
P 		316.5
(1.4)
P 		176
avr 389.6
(3) 		214.3
(-3) 		275.1
(-0.9) 		330.9
(1) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 258.4
(-2.8)
P 		388.3
(0.8)
P 		251.1
(-3)
P 		367.2
(0.2)
P 		332.8
(-0.7)
P 		466.4
(3)
P 		215
B 326.4
(-1.6)
P 		291.5
(-2.2)
P 		243.2
(-3)
P 		341.6
(-1.3)
P 		283.9
(-2.3)
P 		587.7
(3)
P 		345
C 433.8
(1.4)
P 		333.6
(-0.8)
P 		324.3
(-1.1)
P 		235.5
(-3)
P 		375.8
(0.1)
P 		509
(3)
P 		274
avr 339.5
(-1.4) 		337.8
(-1.4) 		272.9
(-3) 		314.8
(-2) 		330.8
(-1.6) 		521
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 133.9
(3)
P 		45.5
(-3)
P 		63.1
(-1.8)
P 		45.5
(-3)
P 		88
B 139.9
(3)
P 		61.1
(-3)
P 		68.3
(-2.5)
P 		77.9
(-1.7)
P 		79
C 119.9
(3)
P 		53.5
(-3)
P 		100.7
(1.3)
P 		53.4
(-3)
P 		67
avr 131.2
(3) 		53.4
(-3) 		77.4
(-1.1) 		58.9
(-2.6) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 47.6
(-3)
P 		138.1
(3)
P 		54.7
(-2.5)
P 		93.1
(0)
P 		100.4
(0.5)
P 		113.6
(1.4)
P 		91
B 113.6
(-1)
P 		97
(-1.6)
P 		59.1
(-3)
P 		90.5
(-1.8)
P 		115.3
(-0.9)
P 		219.2
(3)
P 		160
C 160.8
(2.5)
P 		101.8
(-0.3)
P 		82.5
(-1.3)
P 		47.4
(-3)
P 		121.6
(0.6)
P 		170.4
(3)
P 		123
avr 107.3
(-0.5) 		112.3
(-0.2) 		65.4
(-3) 		77
(-2.3) 		112.4
(-0.2) 		167.7
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183889_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5793
Sequence Type Exemplar sequence
Representative Public ID D1022.7 NCBI
Target Description D1022.7 /REP_DB=WormBase Gene ID /WP=CE02581 /TR=Q18930 /GB=AAB93340.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026874(11), NM_063164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026874 NCBI Caenorhabditis elegans A Kinase Anchor protein family member (aka-1) (aka-1) mRNA, complete cds. 11/11 None
NM_063164 NCBI Caenorhabditis elegans A Kinase Anchor protein family member (aka-1) (aka-1) mRNA, complete cds. 11/11 A 
SNAP00000004648 ENSEMBL cdna:SNAP chromosome:CEL140:II:7473076:7478460:-1 11/11 None
GENEFINDER00000004653 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7473076:7478460:-1 11/11 None
D1022.7a ENSEMBL cdna:known chromosome:CEL140:II:7472660:7478465:-1 gene:D1022.7 11/11 A 
D1022.7b ENSEMBL cdna:known chromosome:CEL140:II:7473076:7478460:-1 gene:D1022.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174216 3 2 NM_001026874 173468_at (11), 183889_s_at (11)
NM_063164 183889_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7473072-7478457(-) 100.0 100.0
Public Domain and Genome References
Ensembl D1022.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022045 A Kinase Anchor protein family member (aka-1) [Caenorhabditis elegans] gb|AAB93340.1| A kinase anchor protein protein 1, isoform a [Caenorhabditis elegans] gb|AAC24507.1| A kinase anchor protein [Caenorhabditis elegans] 0.0
blast NP_495565 A Kinase Anchor protein family member (aka-1) [Caenorhabditis elegans] gb|AAM98040.1| A kinase anchor protein protein 1, isoform b [Caenorhabditis elegans] 0.0
blast CAE67531 Hypothetical protein CBG13053 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 2.7E-30
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 2.6E-31
Sequence
Target Sequence 
>C. ELEGANS:183889_S_AT
gaggatggtgttgctgtaagacttcaaagcgagcgattggaaactattttaaatgcaatt
aacgatggaaacgatgcagttgaatcatctaaagatatggaatttcgtgtcgagtttgtc
gaagacggtaactggatttgtacagacagtgattattatccaaaatcgcagatagacggc
ctctatctcattaacaaatttcaatatggattgtctctcgaaagagctctgacgcaagtt
ctacaagttcagggaataaatgattatggaatcagaatgtcacatgtttataatctcggt
gatggtagacttcagcctgaggaagaacctaaaatttatggaatgattgaaattgctgcg
agggaatgcgttgcaatgcttgagccacatattcaacatttaatttgtgctggtattgga
agcgtttctattcgtttattcgtttcgccgtatgagttcgagtacgatgtttcgaaatgg
ctcgggttagaagccgaaaatgacaaatacaagcaaagtcttgatcagcttattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATGGTGTTGCTGTAAGACTTC 90 403 3229 Antisense
CAAAATCGCAGATAGACGGCCTCTA 216 181 3389 Antisense
GATTGTCTCTCGAAAGAGCTCTGAC 525 435 3437 Antisense
GAGCTCTGACGCAAGTTCTACAAGT 44 389 3452 Antisense
GAATGTCACATGTTTATAATCTCGG 42 333 3503 Antisense
GGTGATGGTAGACTTCAGCCTGAGG 678 497 3526 Antisense
AAATTGCTGCGAGGGAATGCGTTGC 372 115 3578 Antisense
AATGCGTTGCAATGCTTGAGCCACA 482 165 3593 Antisense
GAAGCGTTTCTATTCGTTTATTCGT 100 343 3647 Antisense
GTTTATTCGTTTCGCCGTATGAGTT 285 447 3662 Antisense
GCAAAGTCTTGATCAGCTTATTCCA 111 319 3741 Antisense
Sequence Source Affymetrix Proprietary Database