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[183887_at]

Description K07A9.3 /REP_DB=WormBase Gene ID /WP=CE17171 /TR=Q9TXI9 /GB=AAC68811.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 36.3
(-0.2)
A 		29
(-1.1)
A 		13.7
(-3)
A 		62.4
(3)
A 		49
B 55.8
(1)
A 		5.7
(-3)
A 		36
(-0.6)
A 		81.8
(3)
A 		76
C 59.2
(0.1)
A 		35.1
(-1.7)
A 		17.7
(-3)
A 		97
(3)
P 		79
avr 50.4
(-0.1) 		23.3
(-2.9) 		22.5
(-3) 		80.4
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 74.8
(3)
A 		62.2
(1.9)
A 		49.1
(0.7)
A 		7.5
(-3)
A 		30
(-1)
A 		11.5
(-2.6)
A 		67
B 19.7
(-3)
A 		46.3
(0.2)
A 		30.4
(-1.7)
A 		70
(3)
A 		35.1
(-1.2)
A 		41.2
(-0.4)
A 		50
C 8.6
(-3)
A 		37.2
(3)
A 		37
(3)
A 		19.9
(-0.6)
A 		9.3
(-2.9)
A 		20.1
(-0.6)
A 		29
avr 34.4
(-0.5) 		48.6
(3) 		38.8
(0.6) 		32.5
(-1) 		24.8
(-2.9) 		24.3
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.2
(3)
A 		6.3
(-1.3)
A 		3.6
(-3)
A 		9.1
(0.4)
A 		10
B 17.8
(3)
A 		1.4
(-3)
A 		8.3
(-0.5)
A 		17.4
(2.9)
A 		16
C 19.6
(3)
A 		10.1
(-1.3)
A 		6.2
(-3)
A 		16.4
(1.6)
P 		13
avr 16.9
(3) 		5.9
(-3) 		6
(-2.9) 		14.3
(1.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.8
(0.5)
A 		22.1
(3)
A 		10.7
(-0.4)
A 		1.9
(-3)
A 		9
(-0.9)
A 		2.8
(-2.7)
A 		20
B 6.9
(-3)
A 		15.4
(1.4)
A 		7.4
(-2.7)
A 		18.5
(3)
A 		14.3
(0.8)
A 		15.4
(1.4)
A 		12
C 3.2
(-2.9)
A 		11.3
(3)
A 		9.4
(1.6)
A 		4
(-2.3)
A 		3
(-3)
A 		6.7
(-0.3)
A 		8
avr 8
(-3) 		16.3
(3) 		9.2
(-2.1) 		8.1
(-2.9) 		8.8
(-2.4) 		8.3
(-2.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10679
Sequence Type Exemplar sequence
Representative Public ID K07A9.3 NCBI
Target Description K07A9.3 /REP_DB=WormBase Gene ID /WP=CE17171 /TR=Q9TXI9 /GB=AAC68811.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067739 NCBI Caenorhabditis elegans K07A9.3 (K07A9.3) mRNA, complete cds. 11/11 None
K07A9.3 ENSEMBL cdna:known chromosome:CEL140:IV:1834629:1836138:1 gene:K07A9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040813 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1834634-1836144(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A9.3
Entrez Gene 187085 Entrez gene
SwissProt Q9TXI9 EMBL-EBI
WormBase CE17171 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68811 Hypothetical protein K07A9.3 [Caenorhabditis elegans] ref|NP_500140.1| K07A9.3 [Caenorhabditis elegans] 7.0E-97
blast CAE63847 Hypothetical protein CBG08404 [Caenorhabditis briggsae] 1.0E-26
Sequence
Target Sequence 
>C. ELEGANS:183887_AT
ggacgcttcaacttcggaatttgccactgattttattggaataatttcaaacgagaaatt
ttccggattggatgattttggacgaacggattttttgaggatttacgacaaggctaagaa
gaataaatcgataaaatcgataacccgccacgatgtgaattttcgcgcctacatccttca
agttctgcatggcaaaattgtggtggtcgacaggaaattgttatacaatgtcaataatta
ccttggttttttgaacattcaacctatggtatttgcacagttagaagaaatttcaattca
aaaaaaaagaaaaaaaaaacaaacaaaagttccgagcccaccgaactttagagcttcatc
tctttttttccaaaaaatcggaattcaaaattctcaatttaaaacctgctgcttcgaggt
ctcaattcccctgatcttctcctgcggctcattgacggaagatggtcttgttctgttcac
tttcaatattgcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGCTTCAACTTCGGAATTTGCC 616 523 15 Antisense
AACTTCGGAATTTGCCACTGATTTT 476 139 24 Antisense
AAAATCGATAACCCGCCACGATGTG 154 131 147 Antisense
GCCACGATGTGAATTTTCGCGCCTA 569 279 161 Antisense
TACATCCTTCAAGTTCTGCATGGCA 369 643 184 Antisense
TCAACCTATGGTATTTGCACAGTTA 291 631 273 Antisense
GAGCCCACCGAACTTTAGAGCTTCA 705 381 348 Antisense
TAAAACCTGCTGCTTCGAGGTCTCA 68 639 414 Antisense
TCTCCTGCGGCTCATTGACGGAAGA 452 609 452 Antisense
GAAGATGGTCTTGTTCTGTTCACTT 528 337 472 Antisense
TTCTGTTCACTTTCAATATTGCACC 86 695 485 Antisense
Sequence Source Affymetrix Proprietary Database