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[183886_at]

Description F08F8.1 /REP_DB=WormBase Gene ID /WP=CE02597 /TR=Q19209 /GB=AAA68388.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 15.5
(0.6)
A 		23.5
(3)
A 		3.6
(-3)
A 		13.8
(0.1)
A 		20
B 5.7
(-2.6)
A 		19.7
(3)
A 		6.7
(-2.2)
A 		4.8
(-3)
A 		15
C 6.4
(-2.7)
A 		48.3
(0.8)
A 		3.3
(-3)
A 		73.7
(3)
A 		70
avr 9.2
(-1.9) 		30.5
(2.9) 		4.5
(-3) 		30.8
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 41.1
(3)
A 		28.3
(0.9)
A 		5.6
(-2.8)
A 		4.6
(-3)
A 		15.5
(-1.2)
A 		11
(-1.9)
A 		37
B 22.2
(1.6)
A 		7.9
(-2)
A 		28
(3)
A 		6.5
(-2.3)
A 		3.7
(-3)
A 		11.6
(-1)
A 		24
C 28.5
(0.2)
A 		40.7
(1.9)
A 		5.2
(-3)
A 		48.3
(3)
A 		15.8
(-1.5)
A 		6.9
(-2.8)
A 		43
avr 30.6
(3) 		25.6
(1.6) 		12.9
(-2.1) 		19.8
(-0.1) 		11.7
(-2.5) 		9.8
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.7
(3)
A 		5.1
(2.3)
A 		0.9
(-3)
A 		2
(-1.6)
A 		5
B 1.8
(-1.8)
A 		4.9
(3)
A 		1.6
(-2.1)
A 		1
(-3)
A 		4
C 2.1
(-2.6)
A 		13.9
(3)
A 		1.2
(-3)
A 		12.4
(2.3)
A 		13
avr 3.2
(-1.2) 		8
(3) 		1.2
(-3) 		5.1
(0.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.6
(1.4)
A 		10
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		4.7
(-0.6)
A 		2.7
(-2)
A 		9
B 7.7
(3)
A 		2.6
(-1.9)
A 		6.8
(2.1)
A 		1.7
(-2.8)
A 		1.5
(-3)
A 		4.3
(-0.3)
A 		6
C 10.6
(2)
A 		12.4
(3)
A 		1.3
(-3)
A 		9.7
(1.5)
A 		5.1
(-0.9)
A 		2.3
(-2.5)
A 		11
avr 8.6
(3) 		8.3
(2.7) 		3.1
(-3) 		4.2
(-1.8) 		3.8
(-2.2) 		3.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6451
Sequence Type Exemplar sequence
Representative Public ID F08F8.1 NCBI
Target Description F08F8.1 /REP_DB=WormBase Gene ID /WP=CE02597 /TR=Q19209 /GB=AAA68388.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066227 NCBI Caenorhabditis elegans F08F8.1 (F08F8.1) mRNA, complete cds. 11/11 A 
SNAP00000022555 ENSEMBL cdna:SNAP chromosome:CEL140:III:7365882:7366965:1 9/11 None
F08F8.1 ENSEMBL cdna:known chromosome:CEL140:III:7364527:7366327:1 gene:F08F8.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022569 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7364524-7366325(+) 100.0 100.0
chrIII:7362541-7363160(-) 58.45 58.45
Public Domain and Genome References
Gene Title
Ensembl F08F8.1
Entrez Gene 176049 Entrez gene
SwissProt Q19209 EMBL-EBI
WormBase CE02597 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68388 Hypothetical protein F08F8.1 [Caenorhabditis elegans] ref|NP_498628.1| F08F8.1 [Caenorhabditis elegans] 1.0E-141
blast AAA68387 Hypothetical protein F08F8.5 [Caenorhabditis elegans] ref|NP_498627.1| F08F8.5 [Caenorhabditis elegans] 2.0E-52
blast AAA68388 Hypothetical protein F08F8.1 [Caenorhabditis elegans] ref|NP_498628.1| F08F8.1 [Caenorhabditis elegans] 8.0E-51
blast CAE69248 Hypothetical protein CBG15295 [Caenorhabditis briggsae] 6.0E-19
blast CAE69248 Hypothetical protein CBG15295 [Caenorhabditis briggsae] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:183886_AT
gtcgattaaccttctgcatattcacttccaacaacattgctagacgtctattgattttta
agttgaaattggcaatgccgtggaatacaaataatcgaaattccgtcaaaaattcgttca
tttctcctccaagtatgccagaatacgagcagcttcccaatttccagaatgtccaaccat
tcaatgcttctgaaacttctgaaattatccgattcttacggatccaatttccaataaacg
atttgacatgtggtcttttggaaaacctctccgactatagaaaacccatttccatgaatc
aggtcaccactttgcgattctgtcaaaccattgaattttgtgttgaaaattcagtatttg
tccttgtcactcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGATTAACCTTCTGCATATTCAC 397 473 626 Antisense
CTGCATATTCACTTCCAACAACATT 93 239 639 Antisense
ATGCCAGAATACGAGCAGCTTCCCA 340 41 760 Antisense
GCAGCTTCCCAATTTCCAGAATGTC 439 313 774 Antisense
ATGTCCAACCATTCAATGCTTCTGA 303 49 794 Antisense
GATTCTTACGGATCCAATTTCCAAT 52 371 836 Antisense
TGTGGTCTTTTGGAAAACCTCTCCG 245 553 874 Antisense
ACCTCTCCGACTATAGAAAACCCAT 70 87 890 Antisense
AAAACCCATTTCCATGAATCAGGTC 295 129 906 Antisense
TCAGGTCACCACTTTGCGATTCTGT 250 623 924 Antisense
TCAGTATTTGTCCTTGTCACTCGAT 462 623 976 Antisense
Sequence Source Affymetrix Proprietary Database