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[183885_at]

Description C07G3.8 /REP_DB=WormBase Gene ID /WP=CE07999 /TR=O16321 /GB=AAB65380.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 41.2
(-2.7)
A 		38.9
(-3)
A 		39.3
(-2.9)
A 		82
(3)
A 		43
B 41.4
(-0.2)
A 		41.5
(-0.2)
A 		23.5
(-3)
A 		62.1
(3)
A 		39
C 57.8
(3)
P 		48.8
(1.7)
A 		16.9
(-3)
A 		22
(-2.3)
A 		41
avr 46.8
(1.2) 		43.1
(0.4) 		26.6
(-3) 		55.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 30.9
(-0.6)
A 		34.9
(0.1)
A 		22
(-1.9)
A 		53.7
(3)
A 		41.4
(1.1)
A 		15.2
(-3)
A 		39
B 31.6
(-0.4)
A 		35.3
(0.3)
A 		27.5
(-1.1)
A 		49.7
(3)
A 		35.5
(0.4)
A 		17.5
(-3)
A 		32
C 45.3
(2.3)
A 		50.1
(3)
A 		6.2
(-3)
A 		32.6
(0.6)
A 		25.5
(-0.4)
A 		24.7
(-0.5)
A 		44
avr 35.9
(0.9) 		40.1
(1.8) 		18.6
(-3) 		45.3
(3) 		34.1
(0.5) 		19.1
(-2.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15
(3)
A 		8.4
(-3)
A 		10.3
(-1.3)
A 		12
(0.3)
A 		7
B 13.2
(3)
A 		10.2
(0.7)
A 		5.4
(-3)
A 		13.2
(3)
A 		8
C 19.1
(3)
P 		14
(1)
A 		5.9
(-2.1)
A 		3.7
(-3)
A 		15
avr 15.8
(3) 		10.9
(-0.4) 		7.2
(-3) 		9.6
(-1.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.7
(-1.8)
A 		12.4
(2.3)
A 		4.8
(-2.3)
A 		13.6
(3)
A 		12.5
(2.3)
A 		3.7
(-3)
A 		10
B 11
(0.4)
A 		11.8
(1)
A 		6.7
(-2.8)
A 		13.2
(2.1)
A 		14.4
(3)
A 		6.5
(-3)
A 		8
C 16.8
(3)
A 		15.3
(2.4)
A 		1.6
(-3)
A 		6.6
(-1)
A 		8.3
(-0.4)
A 		8.3
(-0.4)
A 		15
avr 11.2
(1.6) 		13.2
(3) 		4.4
(-3) 		11.1
(1.6) 		11.7
(2) 		6.2
(-1.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183885_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15752
Sequence Type Exemplar sequence
Representative Public ID C07G3.8 NCBI
Target Description C07G3.8 /REP_DB=WormBase Gene ID /WP=CE07999 /TR=O16321 /GB=AAB65380.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071575 NCBI Caenorhabditis elegans C07G3.8 (C07G3.8) mRNA, complete cds. 11/11 None
GENEFINDER00000037804 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3493505:3501861:-1 11/11 None
C07G3.8 ENSEMBL cdna:known chromosome:CEL140:V:3494990:3498217:-1 gene:C07G3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037794 7/11 Cross Hyb Matching Probes None
SNAP00000037795 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3494989-3498217(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07G3.8
Entrez Gene 182381 Entrez gene
WormBase CE38934 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65380 Hypothetical protein C07G3.8 [Caenorhabditis elegans] 0.0
blast NP_503976 C07G3.8 [Caenorhabditis elegans] 1.0E-135
blast AAB65380 Hypothetical protein C07G3.8 [Caenorhabditis elegans] 1.0E-134
blast NP_503976 C07G3.8 [Caenorhabditis elegans] 1.0E-114
blast AAK68613 Hypothetical protein ZK105.6 [Caenorhabditis elegans] ref|NP_504998.2| ZK105.6 [Caenorhabditis elegans] 1.0E-58
blast AAA97994 Hypothetical protein K03B4.6 [Caenorhabditis elegans] ref|NP_504258.1| K03B4.6 [Caenorhabditis elegans] 7.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 2.5E-43
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 8.4E-16
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 7.8E-19
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 2.4E-24
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.4E-17
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 5.1E-32
Sequence
Target Sequence 
>C. ELEGANS:183885_AT
gttgcctcaatgggacggacatttatagtgaggatctgtcggttcaaatcgagctattca
caacaaaaagaggatgttctagatgggttatgaggaagcattgtggtgaaaaatcgatga
ttgattttcgccagaatgcagagatttatgtcaagactcttgagaaattaactcaaacag
ttaaacctgctccaacaccagtatacttgaaccaaaacgtgatttcttgcattcaatggt
tttacaccgcagctgaagctagaagaactagaaacatctcgtgtttgggagaatatgatt
ttttgtcgaacgacaagcaaatccagaaaaaggcatttttggatggcaaatcttgcttcc
tcgatgtaaccaaaaccaagtgcagttccggctataagaagatctctgaaaattatgaag
atattgtgaattttctcacgacaccacccaatccaacaccggatagttgcgagggctcct
attatttttacgaatcatttagatgtacagctttgatcaatgggttttatgataaggcag
aacgtatctcactggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCCTCAATGGGACGGACATTTA 403 439 89 Antisense
GGATCTGTCGGTTCAAATCGAGCTA 546 511 120 Antisense
AAACCTGCTCCAACACCAGTATACT 23 127 271 Antisense
GGTTTTACACCGCAGCTGAAGCTAG 417 485 326 Antisense
TGGATGGCAAATCTTGCTTCCTCGA 54 551 428 Antisense
GCTTCCTCGATGTAACCAAAACCAA 614 305 443 Antisense
AAACCAAGTGCAGTTCCGGCTATAA 521 123 461 Antisense
TGTGAATTTTCTCACGACACCACCC 8 557 513 Antisense
AACACCGGATAGTTGCGAGGGCTCC 492 133 543 Antisense
GCGAGGGCTCCTATTATTTTTACGA 70 243 557 Antisense
TAAGGCAGAACGTATCTCACTGGAA 413 637 621 Antisense
Sequence Source Affymetrix Proprietary Database