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[183884_at]

Description F32B6.11 /REP_DB=WormBase Gene ID /WP=CE20744 /TR=Q9XVV0 /GB=CAA98460.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 80      6grp_total > 32      4grp_total > 28      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 235.3
(0.1)
P 		204.4
(-0.9)
P 		144.8
(-3)
P 		318
(3)
P 		173
B 225
(1.8)
P 		217.3
(1.1)
P 		172.1
(-3)
P 		237.7
(3)
P 		66
C 241.9
(2.3)
P 		241.5
(2.3)
P 		133.3
(-3)
P 		256.8
(3)
P 		124
avr 234.1
(1.2) 		221.1
(0.5) 		150.1
(-3) 		270.8
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 268.6
(1.2)
P 		247.8
(0.6)
P 		336
(3)
P 		246.7
(0.6)
P 		258.9
(0.9)
P 		116.8
(-3)
P 		219
B 299.3
(2.3)
P 		312.7
(2.7)
P 		324
(3)
P 		248.1
(0.7)
P 		220.7
(-0.1)
P 		121.9
(-3)
P 		202
C 297.9
(2.3)
P 		319.2
(3)
P 		254.3
(0.9)
P 		292.5
(2.1)
P 		185.7
(-1.3)
P 		132.8
(-3)
P 		186
avr 288.6
(2.5) 		293.2
(2.6) 		304.8
(3) 		262.4
(1.6) 		221.8
(0.2) 		123.8
(-3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 85.7
(3)
P 		44.4
(-2.2)
P 		37.8
(-3)
P 		46.6
(-1.9)
P 		48
B 71.8
(3)
P 		53.7
(-0.4)
P 		39.9
(-3)
P 		50.7
(-1)
P 		32
C 80.1
(3)
P 		69.4
(1.3)
P 		46.5
(-2.5)
P 		43.3
(-3)
P 		37
avr 79.2
(3) 		55.8
(-0.7) 		41.4
(-3) 		46.9
(-2.1) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 49.5
(-0.9)
P 		88.1
(3)
P 		73.2
(1.5)
P 		62.6
(0.4)
P 		78.1
(2)
P 		28.4
(-3)
P 		60
B 104.1
(3)
P 		104.1
(3)
P 		78.7
(0.4)
P 		65.7
(-0.9)
P 		89.6
(1.5)
P 		45.4
(-3)
P 		59
C 110.4
(3)
P 		97.4
(1.8)
P 		64.7
(-1.2)
P 		58.8
(-1.7)
P 		60.1
(-1.6)
P 		44.5
(-3)
P 		66
avr 88
(2.1) 		96.5
(3) 		72.2
(0.4) 		62.4
(-0.6) 		75.9
(0.8) 		39.4
(-3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13268
Sequence Type Exemplar sequence
Representative Public ID F32B6.11 NCBI
Target Description F32B6.11 /REP_DB=WormBase Gene ID /WP=CE20744 /TR=Q9XVV0 /GB=CAA98460.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073381 NCBI Caenorhabditis elegans F32B6.11 (F32B6.11) mRNA, complete cds. 11/11 None
SNAP00000041037 ENSEMBL cdna:SNAP chromosome:CEL140:V:10908497:10909224:1 11/11 None
GENEFINDER00000041046 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10906646:10909224:1 11/11 None
F32B6.11 ENSEMBL cdna:known chromosome:CEL140:V:10908497:10909290:1 gene:F32B6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10908496-10909224(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32B6.11
Entrez Gene 179512 Entrez gene
SwissProt Q9XVV0 EMBL-EBI
WormBase CE20744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE64918 Hypothetical protein CBG09738 [Caenorhabditis briggsae] 2.0E-80
blast CAA98460 Hypothetical protein F32B6.11 [Caenorhabditis elegans] ref|NP_505782.1| F32B6.11 [Caenorhabditis elegans] 5.0E-74
blast CAA98460 Hypothetical protein F32B6.11 [Caenorhabditis elegans] ref|NP_505782.1| F32B6.11 [Caenorhabditis elegans] 1.0E-73
blast CAE64918 Hypothetical protein CBG09738 [Caenorhabditis briggsae] 1.0E-66
blast XP_621559 PREDICTED: similar to protein of bilaterial origin like (5L387) [Mus musculus] 2.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505782.1 1 44-66
F32B6.11 1 44-66
SNAP00000041037 1 44-66
GENEFINDER00000041046 1 68-90
Sequence
Target Sequence 
>C. ELEGANS:183884_AT
tctctcctactctgctcgaatgagaggtcgatccaaacaaccgatttactcttcagataa
gcgagcaaagttcactcagaaggacagccagaaatggataaggttcatcacggtacttgg
atacattctttctgtatcattaccagcaatttcattgagtgtatactacatttacatttg
ggatccaggatatataactaagtacccggcggacccaattaataaaaccgtcaccattca
taaatctccaatcttgtcacaaaaagtcgaacgagatcttctaccaatggctacaactat
cgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTCCTACTCTGCTCGAATGAGA 166 613 30 Antisense
GATCCAAACAACCGATTTACTCTTC 249 415 59 Antisense
AAGTTCACTCAGAAGGACAGCCAGA 271 157 97 Antisense
GGATAAGGTTCATCACGGTACTTGG 547 507 125 Antisense
ACGGTACTTGGATACATTCTTTCTG 542 89 139 Antisense
ATTCTTTCTGTATCATTACCAGCAA 693 9 154 Antisense
ACTACATTTACATTTGGGATCCAGG 203 101 194 Antisense
AAACCGTCACCATTCATAAATCTCC 63 127 254 Antisense
ATAAATCTCCAATCTTGTCACAAAA 398 25 269 Antisense
AGTCGAACGAGATCTTCTACCAATG 457 59 294 Antisense
TCTACCAATGGCTACAACTATCGAA 413 613 309 Antisense
Sequence Source Affymetrix Proprietary Database