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[183883_at]

Description B0222.5 /REP_DB=WormBase Gene ID /WP=CE06696 /TR=Q17457 /GB=AAA92322.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 95      6grp_total > 88      4grp_total > 08      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 731
1 2 3 4 range
A 457.6
(-2.7)
P 		416.3
(-3)
P 		785.5
(0)
P 		1147.6
(3)
P 		731
B 442.7
(-3)
P 		517.2
(-2.3)
P 		581.9
(-1.7)
P 		1078.9
(3)
P 		636
C 461.7
(-2.8)
P 		445.3
(-3)
P 		557.6
(-1.5)
P 		898.6
(3)
P 		453
avr 454
(-3) 		459.6
(-2.9) 		641.7
(-1.1) 		1041.7
(3) 		588

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 664
1 2 3 4 5 6 range
A 564.3
(-3)
P 		671.7
(-1.8)
P 		631
(-2.2)
P 		728.9
(-1.1)
P 		795.9
(-0.3)
P 		1083.5
(3)
P 		519
B 630.6
(-2.6)
P 		672.3
(-2.1)
P 		604.1
(-2.9)
P 		599.5
(-3)
P 		1109.4
(3)
P 		1087.2
(2.7)
P 		510
C 445.2
(-3)
P 		729.1
(0.4)
P 		532.6
(-1.9)
P 		730.4
(0.4)
P 		654.7
(-0.5)
P 		943.5
(3)
P 		498
avr 546.7
(-3) 		691
(-1.2) 		589.2
(-2.5) 		686.3
(-1.3) 		853.3
(0.7) 		1038.1
(3) 		491
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 166.6
(1)
P 		90.4
(-3)
P 		205.3
(3)
P 		168
(1.1)
P 		115
B 141.2
(-2.2)
P 		127.7
(-3)
P 		134.8
(-2.6)
P 		229.9
(3)
P 		102
C 152.8
(-0.8)
P 		128
(-3)
P 		194.3
(3)
P 		151.5
(-0.9)
P 		66
avr 153.5
(0.4) 		115.4
(-3) 		178.1
(2.6) 		183.1
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 104
(-3)
P 		238.9
(2.1)
P 		137.4
(-1.7)
P 		184.9
(0)
P 		240.2
(2.1)
P 		263.8
(3)
P 		160
B 219.4
(-1.6)
P 		223.8
(-1.5)
P 		146.7
(-3)
P 		158.8
(-2.8)
P 		450.7
(3)
P 		405.4
(2.1)
P 		304
C 165
(-2)
P 		222.5
(-0.1)
P 		135.6
(-3)
P 		146.9
(-2.6)
P 		211.9
(-0.5)
P 		315.8
(3)
P 		180
avr 162.8
(-2.3) 		228.4
(-0.2) 		139.9
(-3) 		163.5
(-2.2) 		300.9
(2.1) 		328.3
(3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183883_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12238
Sequence Type Exemplar sequence
Representative Public ID B0222.5 NCBI
Target Description B0222.5 /REP_DB=WormBase Gene ID /WP=CE06696 /TR=Q17457 /GB=AAA92322.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072972 NCBI Caenorhabditis elegans B0222.5 (B0222.5) mRNA, complete cds. 11/11 None
SNAP00000023007 ENSEMBL cdna:SNAP chromosome:CEL140:V:9155316:9157455:-1 11/11 None
GENEFINDER00000023020 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9155316:9157455:-1 11/11 None
B0222.5 ENSEMBL cdna:known chromosome:CEL140:V:9154907:9157455:-1 gene:B0222.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9155316-9157456(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0222.5
Entrez Gene 181860 Entrez gene
SwissProt Q17457 EMBL-EBI
WormBase CE06696 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA92322 Hypothetical protein B0222.5 [Caenorhabditis elegans] ref|NP_505373.1| B0222.5 [Caenorhabditis elegans] 0.0
blast CAE72119 Hypothetical protein CBG19214 [Caenorhabditis briggsae] 1.0E-170
blast CAE72119 Hypothetical protein CBG19214 [Caenorhabditis briggsae] 1.0E-160
blast CAE72118 Hypothetical protein CBG19213 [Caenorhabditis briggsae] 5.0E-45
blast CAE72118 Hypothetical protein CBG19213 [Caenorhabditis briggsae] 6.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-9
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 4.8E-13
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-9
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 7.5E-13
Sequence
Target Sequence 
>C. ELEGANS:183883_AT
gcattccccgcttttgaaaaaccagatcctgccaaaccgaaaaatgatcaaccgattgga
aaaccatggtgtgcaagtaacagaaatgctggacatacatgcaatcaaaataaaacttcg
ataagatactggtttgacgttgaaaccttccaatgtttcccattcgaacacaaaggctgt
ggtggaaatcagaactcctatagaacaagtagtgaatgctattttgactgtgtcttgcaa
gactacttcagttgtgcaatgcaatcacaaccagctagaaagtcgaatggacaatggtat
tcttgcccagaaggcccagatggtccaccaggcttcaagactactacaactccaggccca
aaactaacctctgatggttgtccaaagggatatatttgttctatgggagcattctttggt
atttgctgcgaggagaacttgacaaatcgctaccaagcagcattcaaaccattatgcaaa
aacaagaaagaagctttgcaaacgaaacaggacgattggtcgagtgcaatgctcggaaaa
tcatgttccgatagattctgtccaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTCCCCGCTTTTGAAAAACCAG 323 305 505 Antisense
ACCAGATCCTGCCAAACCGAAAAAT 685 85 525 Antisense
TTCCAATGTTTCCCATTCGAACACA 550 699 652 Antisense
TGAATGCTATTTTGACTGTGTCTTG 219 575 717 Antisense
GTCTTGCAAGACTACTTCAGTTGTG 47 469 736 Antisense
AATGGTATTCTTGCCCAGAAGGCCC 16 153 797 Antisense
GTCCACCAGGCTTCAAGACTACTAC 472 477 827 Antisense
TACTACAACTCCAGGCCCAAAACTA 536 199 846 Antisense
GACAAATCGCTACCAAGCAGCATTC 672 365 945 Antisense
GGACGATTGGTCGAGTGCAATGCTC 47 523 1014 Antisense
TGTTCCGATAGATTCTGTCCAAGCA 283 563 1048 Antisense
Sequence Source Affymetrix Proprietary Database