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[183882_at]

Description Y11D7A.8 /REP_DB=WormBase Gene ID /WP=CE20191 /TR=Q9XWR4 /GB=CAA21584.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 68.9
(-1.5)
P 		70.6
(-1.4)
A 		24.6
(-3)
A 		197.8
(3)
P 		173
B 83.6
(1.4)
P 		25
(-2)
A 		8.2
(-3)
A 		111.3
(3)
P 		103
C 98
(-0.3)
P 		12.8
(-2.8)
A 		5.2
(-3)
A 		213
(3)
P 		208
avr 83.5
(-0.4) 		36.1
(-2.1) 		12.7
(-3) 		174
(3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 53.7
(3)
A 		43.1
(-1.4)
P 		50.5
(1.7)
P 		39.2
(-3)
A 		42.2
(-1.8)
A 		48.9
(1)
A 		15
B 39.6
(-3)
P 		85.3
(1.3)
P 		103.9
(3)
P 		54.2
(-1.6)
A 		62.3
(-0.9)
P 		44.2
(-2.6)
A 		64
C 37.2
(-3)
P 		112.2
(3)
P 		39.3
(-2.8)
A 		87.7
(1)
P 		38
(-2.9)
A 		62
(-1)
A 		75
avr 43.5
(-3) 		80.2
(3) 		64.6
(0.4) 		60.4
(-0.2) 		47.5
(-2.3) 		51.7
(-1.7) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 25.1
(2)
P 		15.3
(-0.6)
A 		6.4
(-3)
A 		29
(3)
P 		23
B 26.6
(3)
P 		6.2
(-2)
A 		1.9
(-3)
A 		23.7
(2.3)
P 		25
C 32.4
(2.4)
P 		3.7
(-2.7)
A 		1.8
(-3)
A 		35.9
(3)
P 		34
avr 28
(2.7) 		8.4
(-1.9) 		3.4
(-3) 		29.5
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 9.9
(-3)
A 		15.3
(3)
P 		11
(-1.8)
P 		9.9
(-3)
A 		12.7
(0.1)
A 		11.9
(-0.8)
A 		5
B 13.8
(-3)
P 		28.4
(3)
P 		25.2
(1.7)
P 		14.4
(-2.8)
A 		25.3
(1.7)
P 		16.5
(-1.9)
A 		15
C 13.8
(-2.1)
P 		34.2
(3)
P 		10
(-3)
A 		17.6
(-1.1)
P 		12.3
(-2.4)
A 		20.8
(-0.3)
A 		24
avr 12.5
(-3) 		26
(3) 		15.4
(-1.7) 		14
(-2.3) 		16.8
(-1.1) 		16.4
(-1.3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8592
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.8 NCBI
Target Description Y11D7A.8 /REP_DB=WormBase Gene ID /WP=CE20191 /TR=Q9XWR4 /GB=CAA21584.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069213 NCBI Caenorhabditis elegans Y11D7A.8 (Y11D7A.8) mRNA, complete cds. 11/11 None
SNAP00000011206 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9251435:9253890:1 10/11 None
GENEFINDER00000011223 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9251327:9253890:1 11/11 None
Y11D7A.8 ENSEMBL cdna:known chromosome:CEL140:IV:9251327:9253890:1 gene:Y11D7A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9251332-9253896(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.8
Entrez Gene 189433 Entrez gene
SwissProt Q9XWR4 EMBL-EBI
WormBase CE20191 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21584 Hypothetical protein Y11D7A.8 [Caenorhabditis elegans] ref|NP_501614.1| Y11D7A.8 [Caenorhabditis elegans] 0.0
blast CAE69059 Hypothetical protein CBG15070 [Caenorhabditis briggsae] 0.0
blast AAQ01531 Hypothetical protein H06H21.8b [Caenorhabditis elegans] ref|NP_001023255.1| H06H21.8b [Caenorhabditis elegans] pir||G88678 protein H06H21.8 [imported] - Caenorhabditis elegans 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:183882_AT
catacgtcatggagcacacttgttgccgatttgcctccatcatattatgctcacacaatt
ggaagttttgatgatacactgactttcttcgagaggcaagatgtggatcattcaagattt
gtgcatataggaaaatatttctctgacgaatatctacattcaacggcaactgaaacaact
gaattacttgatattccaaaagttttggttcacggggaaccatatgcgagtaatgttttt
acaaaaatggaaggaaaagaacaacgaatcttatcacttattgattggacagaaggtcac
tctggatgtttcgctgaagatgttgcaaaaataatatgttggaatttgaatgcaaaagag
cgagttgataatacaagttcacttctcgagggataccattttcatttggcaagatattac
gacggtgattgcccattcacagttgatataatacaaagagcttatgaagtattcgtccca
tttgcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATACGTCATGGAGCACACTTGTTG 530 213 814 Antisense
TGGAGCACACTTGTTGCCGATTTGC 253 549 823 Antisense
GATTTGCCTCCATCATATTATGCTC 540 427 841 Antisense
GATACACTGACTTTCTTCGAGAGGC 190 423 886 Antisense
AATATCTACATTCAACGGCAACTGA 349 171 962 Antisense
GTTCACGGGGAACCATATGCGAGTA 409 443 1021 Antisense
AGAAGGTCACTCTGGATGTTTCGCT 422 75 1104 Antisense
AGTTCACTTCTCGAGGGATACCATT 557 63 1189 Antisense
ATATTACGACGGTGATTGCCCATTC 413 11 1227 Antisense
GATTGCCCATTCACAGTTGATATAA 587 433 1240 Antisense
TGAAGTATTCGTCCCATTTGCAATG 97 573 1278 Antisense
Sequence Source Affymetrix Proprietary Database