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[183881_at]

Description F42E11.3 /REP_DB=WormBase Gene ID /WP=CE03310 /TR=Q20333 /GB=CAA91465.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 71.3
(2.7)
P 		70
(2.5)
A 		36.2
(-3)
A 		73
(3)
P 		37
B 74.9
(1.2)
P 		89.6
(3)
P 		41.2
(-3)
A 		50.6
(-1.8)
P 		48
C 100.9
(3)
P 		94.4
(2.2)
M 		52.2
(-3)
M 		79.4
(0.4)
P 		49
avr 82.4
(2.7) 		84.7
(3) 		43.2
(-3) 		67.7
(0.5) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 79.7
(1.8)
A 		92.7
(3)
P 		61.8
(0.2)
P 		58.6
(-0.1)
A 		71.7
(1.1)
A 		27
(-3)
A 		66
B 81.1
(3)
P 		47.1
(-1.1)
P 		69
(1.5)
P 		31.1
(-3)
A 		61
(0.6)
P 		46.4
(-1.2)
M 		50
C 63
(0.9)
P 		84.7
(3)
P 		54.2
(0.1)
A 		21.4
(-3)
A 		42.6
(-1)
A 		31.5
(-2)
A 		63
avr 74.6
(3) 		74.8
(3) 		61.7
(1) 		37
(-2.7) 		58.4
(0.5) 		35
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 26
(3)
P 		15.2
(-0.9)
A 		9.5
(-3)
A 		10.7
(-2.6)
P 		17
B 23.9
(3)
P 		22.1
(2.2)
P 		9.6
(-3)
A 		10.8
(-2.5)
P 		14
C 33.4
(3)
P 		27.1
(1.1)
M 		18.2
(-1.6)
M 		13.4
(-3)
P 		20
avr 27.8
(3) 		21.5
(0.7) 		12.4
(-2.7) 		11.6
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 14.7
(-1.2)
A 		33
(3)
P 		13.5
(-1.4)
P 		14.9
(-1.1)
A 		21.6
(0.4)
A 		6.6
(-3)
A 		26
B 28.2
(3)
P 		15.7
(-0.8)
P 		16.8
(-0.4)
P 		8.2
(-3)
A 		24.8
(2)
P 		17.3
(-0.3)
M 		20
C 23.3
(2.3)
P 		25.9
(3)
P 		13.8
(-0.4)
A 		4.3
(-3)
A 		13.8
(-0.4)
A 		10.5
(-1.3)
A 		22
avr 22.1
(1.9) 		24.9
(3) 		14.7
(-0.9) 		9.1
(-3) 		20.1
(1.2) 		11.5
(-2.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16550
Sequence Type Exemplar sequence
Representative Public ID F42E11.3 NCBI
Target Description F42E11.3 /REP_DB=WormBase Gene ID /WP=CE03310 /TR=Q20333 /GB=CAA91465.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077504 NCBI Caenorhabditis elegans F42E11.3 (F42E11.3) mRNA, complete cds. 11/11 None
SNAP00000010141 ENSEMBL cdna:SNAP chromosome:CEL140:X:11374278:11375533:-1 11/11 None
GENEFINDER00000010144 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11374278:11375566:-1 11/11 None
F42E11.3 ENSEMBL cdna:known chromosome:CEL140:X:11374523:11375533:-1 gene:F42E11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11374522-11375533(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42E11.3
Entrez Gene 185669 Entrez gene
SwissProt Q20333 EMBL-EBI
WormBase CE03310 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91465 Hypothetical protein F42E11.3 [Caenorhabditis elegans] ref|NP_509905.1| F42E11.3 [Caenorhabditis elegans] 1.0E-137
blast CAA91465 Hypothetical protein F42E11.3 [Caenorhabditis elegans] ref|NP_509905.1| F42E11.3 [Caenorhabditis elegans] 1.0E-130
blast CAE70649 Hypothetical protein CBG17352 [Caenorhabditis briggsae] 3.0E-91
blast CAE70649 Hypothetical protein CBG17352 [Caenorhabditis briggsae] 4.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509905.1 5 25-47,62-84,115-132,147-178,205-227
F42E11.3 5 25-47,62-84,115-132,147-178,205-227
SNAP00000010141 6 25-47,62-84,115-132,147-178,206-228,248-270
GENEFINDER00000010144 7 43-65,72-94,124-143,150-172,177-196,217-239,259-281
Sequence
Target Sequence 
>C. ELEGANS:183881_AT
tcatctccgagcacacattcaaagcgatcttcattattcaaatgatcactttcggcgcgg
cactggtcattcagaagttttcctttatggtcaactcggtagaatatgttacgtactcaa
catttccatttattccaaagtttgtgatctccatttgtgatcggctagtaacggctcaaa
tgcctttgtattggtttgttgtcagtgcttttctcataattcaaattgcccaattcgcta
atcaaaatccacgcggaattaaactggcacatacctacttgataccttacggaataatca
ttaccctcatttccttcattaccccggatcatatgaaactttttatgatcgtcgtctgct
ttctaatctggtggatttatcgaaagcatatgattgcccagttgtacagccaagacatga
ccgcccgcgacgttttgaatatgcgccggatgaacatctggctgtccagtcagattttcg
ggacactgatcttccatctgctcgacttaggaatgatgctggctatcaagtcgtctgtga
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCTCCGAGCACACATTCAAAGC 512 619 170 Antisense
GTACTCAACATTTCCATTTATTCCA 99 459 282 Antisense
GATCGGCTAGTAACGGCTCAAATGC 551 417 328 Antisense
GTTTGTTGTCAGTGCTTTTCTCATA 58 453 363 Antisense
TGGCACATACCTACTTGATACCTTA 382 545 434 Antisense
GAATAATCATTACCCTCATTTCCTT 665 325 461 Antisense
TTATGATCGTCGTCTGCTTTCTAAT 394 679 512 Antisense
GCGCCGGATGAACATCTGGCTGTCC 347 287 612 Antisense
CTGGCTGTCCAGTCAGATTTTCGGG 327 241 627 Antisense
TTTTCGGGACACTGATCTTCCATCT 380 673 644 Antisense
TGCTGGCTATCAAGTCGTCTGTGAC 239 583 686 Antisense
Sequence Source Affymetrix Proprietary Database