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[183880_at]

Description T05A8.2 /REP_DB=WormBase Gene ID /WP=CE18198 /TR=O44859 /GB=AAB95019.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 10      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 12.4
(-3)
A 		26.1
(-0.9)
A 		17
(-2.3)
A 		50.9
(3)
A 		39
B 12.1
(-0)
A 		5.6
(-2.6)
A 		4.7
(-3)
A 		19.5
(3)
A 		15
C 11.4
(-3)
A 		22.4
(-1.6)
A 		12.2
(-2.9)
A 		59.4
(3)
A 		48
avr 12
(-2.9) 		18
(-1.7) 		11.3
(-3) 		43.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 63.3
(3)
A 		41.8
(0.8)
A 		4.9
(-3)
A 		16.3
(-1.8)
A 		15.2
(-1.9)
A 		10
(-2.5)
A 		58
B 29.9
(3)
A 		11.7
(-1)
A 		22.9
(1.5)
A 		12.5
(-0.8)
A 		11.4
(-1.1)
A 		2.7
(-3)
A 		27
C 76.9
(3)
A 		7.8
(-2.5)
A 		4.2
(-2.8)
A 		15.3
(-1.9)
A 		12.1
(-2.2)
A 		1.6
(-3)
A 		75
avr 56.7
(3) 		20.4
(-1.2) 		10.7
(-2.3) 		14.7
(-1.9) 		12.9
(-2.1) 		4.8
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.5
(-2.8)
A 		5.7
(-0.5)
A 		4.4
(-3)
A 		7.5
(3)
A 		3
B 3.9
(2.4)
A 		1.4
(-2.4)
A 		1.1
(-3)
A 		4.2
(3)
A 		3
C 3.8
(-3)
A 		6.4
(-0.5)
A 		4.3
(-2.5)
A 		10
(3)
A 		6
avr 4.1
(-1.8) 		4.5
(-1.2) 		3.3
(-3) 		7.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 11.7
(1.6)
A 		14.9
(3)
A 		1.1
(-3)
A 		4.1
(-1.7)
A 		4.6
(-1.5)
A 		2.4
(-2.4)
A 		14
B 10.4
(3)
A 		3.9
(-1.1)
A 		5.6
(-0.1)
A 		3.3
(-1.5)
A 		4.7
(-0.6)
A 		1
(-3)
A 		9
C 28.5
(3)
A 		2.4
(-2.6)
A 		1.1
(-2.9)
A 		3.1
(-2.4)
A 		3.9
(-2.3)
A 		0.5
(-3)
A 		28
avr 16.9
(3) 		7.1
(-0.8) 		2.6
(-2.5) 		3.5
(-2.2) 		4.4
(-1.8) 		1.3
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5680
Sequence Type Exemplar sequence
Representative Public ID T05A8.2 NCBI
Target Description T05A8.2 /REP_DB=WormBase Gene ID /WP=CE18198 /TR=O44859 /GB=AAB95019.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061940 NCBI Caenorhabditis elegans T05A8.2 (T05A8.2) mRNA, complete cds. 11/11 None
SNAP00000017321 ENSEMBL cdna:SNAP chromosome:CEL140:II:2710381:2711019:-1 11/11 None
GENEFINDER00000017331 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2708830:2711826:-1 11/11 None
T05A8.2 ENSEMBL cdna:known chromosome:CEL140:II:2710298:2711019:-1 gene:T05A8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2710296-2711018(-) 96.4 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A8.2
Entrez Gene 188089 Entrez gene
SwissProt O44859 EMBL-EBI
WormBase CE18198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494341 T05A8.2 [Caenorhabditis elegans] gb|AAB95019.1| Hypothetical protein T05A8.2 [Caenorhabditis elegans] 1.0E-120
blast NP_494341 T05A8.2 [Caenorhabditis elegans] gb|AAB95019.1| Hypothetical protein T05A8.2 [Caenorhabditis elegans] 1.0E-117
blast NP_494341 T05A8.2 [Caenorhabditis elegans] gb|AAB95019.1| Hypothetical protein T05A8.2 [Caenorhabditis elegans] 1.0E-113
blast NP_494340 T05A8.1 [Caenorhabditis elegans] gb|AAB95018.1| Hypothetical protein T05A8.1 [Caenorhabditis elegans] 3.0E-76
blast AAC68731 Hypothetical protein Y47G7B.2 [Caenorhabditis elegans] ref|NP_494339.1| Y47G7B.2 [Caenorhabditis elegans] 9.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494341.1 1 12-34
T05A8.2 1 12-34
SNAP00000017321 1 12-34
GENEFINDER00000017331 1 44-66
Sequence
Target Sequence 
>C. ELEGANS:183880_AT
tgcaatacctgtcgtcgtggtgtcatatattgcagtcaattctgtttggaaccactttca
cgacgacacatcggaagtatcccgtgaacatccacccagttatgaagaggtttcttggaa
tgaacctacctgtactcatcaagacatttcttccaatcaattttccaattttcatcaacc
cgccacttggagtgaaccatggtttccatatcaggatgtttgttggaatggactcactag
tattcctcaagccgtcttccagagtgaactatccaactctcatcaacccgtccctcagag
tgaatcatcatgttctggtgaacgtgtatgtccttattgcggacggcggaattgtcctgg
ccctgtttacatcccatctcaaatgaagattcctccaaaacttccttctgttcgcaaaac
caaacagtatcggtataattccaaaacagaaaaattcacgttttccaatgattcgtcttc
tact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATACCTGTCGTCGTGGTGTCA 660 575 84 Antisense
TTTGGAACCACTTTCACGACGACAC 427 663 128 Antisense
CGGAAGTATCCCGTGAACATCCACC 187 243 155 Antisense
GAACCTACCTGTACTCATCAAGACA 568 345 205 Antisense
TCAACCCGCCACTTGGAGTGAACCA 248 631 258 Antisense
GGACTCACTAGTATTCCTCAAGCCG 590 513 313 Antisense
TCAAGCCGTCTTCCAGAGTGAACTA 519 629 330 Antisense
AGTGAACTATCCAACTCTCATCAAC 1 61 346 Antisense
TGCGGACGGCGGAATTGTCCTGGCC 325 583 421 Antisense
GAAGATTCCTCCAAAACTTCCTTCT 136 337 468 Antisense
GTTTTCCAATGATTCGTCTTCTACT 114 449 543 Antisense
Sequence Source Affymetrix Proprietary Database