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[183879_at]

Description C08F1.1 /REP_DB=WormBase Gene ID /WP=CE08017 /TR=O17179 /GB=AAK31402.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 17.8
(-1.8)
A 		2.9
(-3)
A 		4.5
(-2.9)
A 		75.1
(3)
A 		72
B 15.5
(3)
A 		6
(-1.2)
A 		4.1
(-2)
A 		1.9
(-3)
A 		14
C 7.7
(-2.8)
A 		5.2
(-3)
A 		15.8
(-2.1)
A 		74.4
(3)
P 		69
avr 13.7
(-1.8) 		4.7
(-3) 		8.1
(-2.6) 		50.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 7.3
(-2.6)
A 		27.5
(0.4)
A 		45.4
(3)
A 		15.3
(-1.4)
A 		6.2
(-2.7)
A 		4.3
(-3)
A 		41
B 7.4
(-1.1)
A 		4
(-2.1)
A 		20.5
(3)
A 		1.2
(-3)
A 		3.4
(-2.3)
A 		2.3
(-2.7)
A 		19
C 3.4
(-2.8)
A 		48.5
(3)
A 		9.2
(-2)
A 		3.7
(-2.7)
A 		3.2
(-2.8)
A 		1.5
(-3)
A 		47
avr 6
(-2.2) 		26.7
(3) 		25
(2.6) 		6.7
(-2) 		4.3
(-2.6) 		2.7
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.5
(0.4)
A 		0.6
(-3)
A 		1.2
(-2.7)
A 		11
(3)
A 		10
B 4.9
(3)
A 		1.5
(-1.5)
A 		1
(-2.2)
A 		0.4
(-3)
A 		5
C 2.6
(-2.4)
A 		1.5
(-3)
A 		5.5
(-0.8)
A 		12.5
(3)
P 		11
avr 4.7
(0.1) 		1.2
(-3) 		2.6
(-1.8) 		8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.3
(-2.8)
A 		9.8
(2.9)
A 		9.9
(3)
A 		3.9
(-1)
A 		1.9
(-2.4)
A 		1
(-3)
A 		9
B 2.6
(-0.1)
A 		1.3
(-1.7)
A 		5
(3)
A 		0.3
(-3)
A 		1.4
(-1.6)
A 		0.9
(-2.2)
A 		5
C 1.3
(-2.7)
A 		14.8
(3)
A 		2.3
(-2.2)
A 		0.8
(-2.9)
A 		1
(-2.8)
A 		0.5
(-3)
A 		14
avr 1.7
(-2.3) 		8.6
(3) 		5.7
(0.8) 		1.7
(-2.3) 		1.4
(-2.5) 		0.8
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5606
Sequence Type Exemplar sequence
Representative Public ID C08F1.1 NCBI
Target Description C08F1.1 /REP_DB=WormBase Gene ID /WP=CE08017 /TR=O17179 /GB=AAK31402.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061679 NCBI Caenorhabditis elegans C08F1.1 (C08F1.1) mRNA, complete cds. 11/11 None
SNAP00000012045 ENSEMBL cdna:SNAP chromosome:CEL140:II:1800055:1801380:1 11/11 None
C08F1.1 ENSEMBL cdna:known chromosome:CEL140:II:1799650:1801380:1 gene:C08F1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012058 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1799340-1801379(+) 90.51 90.51
Public Domain and Genome References
Gene Title
Ensembl C08F1.1
Entrez Gene 182410 Entrez gene
SwissProt O17179 EMBL-EBI
WormBase CE36683 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31402 Hypothetical protein C08F1.1 [Caenorhabditis elegans] ref|NP_494080.2| C08F1.1 [Caenorhabditis elegans] 0.0
blast AAK31402 Hypothetical protein C08F1.1 [Caenorhabditis elegans] ref|NP_494080.2| C08F1.1 [Caenorhabditis elegans] 1.0E-156
blast AAK31520 Hypothetical protein F36H5.1 [Caenorhabditis elegans] ref|NP_494075.1| F36H5.1 [Caenorhabditis elegans] 8.0E-93
blast T25744 hypothetical protein F36H5.1 - Caenorhabditis elegans 8.0E-93
blast AAM98020 Hypothetical protein F36H5.2b [Caenorhabditis elegans] ref|NP_872003.1| F36H5.2b [Caenorhabditis elegans] 4.0E-74
blast T25743 hypothetical protein F36H5.2 - Caenorhabditis elegans 4.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 8.4E-16
Pfam IPR002083 EMBL-EBI MATH 3.7E-21
Pfam IPR002083 EMBL-EBI MATH 7.3E-25
Pfam IPR002083 EMBL-EBI MATH 2.2E-19
Pfam IPR002083 EMBL-EBI MATH 1.2E-15
Pfam IPR002083 EMBL-EBI MATH 5.1E-26
Sequence
Target Sequence 
>C. ELEGANS:183879_AT
acggtgggcaattcaagctagctaccaactttcgcttgtttattgtcatggaaaccgcat
cactttgaataattttgaatacatttttgaaacccccggttcaaacggagaaccaaaaat
gataccatggaagactttgagaatttctgtgaaaaaagaacaaatgtgcattttggtata
tcttcattgtgacaaattcgtgtgcaacgatgaacactggtccgttcaaactgaagttca
gcttatgttggtgtcagaaactggaagaactttaactgaccgagtcactcatatcttcga
gagacccgaaggaatctgttggacaaaaagcttgaagtgggaagatttggagaaagactt
catggttgatgacagtgttaggattgaagctcgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGTGGGCAATTCAAGCTAGCTAC 474 95 1005 Antisense
AGCTAGCTACCAACTTTCGCTTGTT 550 77 1020 Antisense
GGAAACCGCATCACTTTGAATAATT 33 529 1054 Antisense
GTGCATTTTGGTATATCTTCATTGT 581 479 1170 Antisense
CATTGTGACAAATTCGTGTGCAACG 108 215 1189 Antisense
AACACTGGTCCGTTCAAACTGAAGT 511 125 1217 Antisense
GAAGTTCAGCTTATGTTGGTGTCAG 236 337 1237 Antisense
AACTGACCGAGTCACTCATATCTTC 601 141 1278 Antisense
GTCACTCATATCTTCGAGAGACCCG 510 465 1288 Antisense
GAGACCCGAAGGAATCTGTTGGACA 227 395 1305 Antisense
CAGTGTTAGGATTGAAGCTCGTGTC 424 207 1377 Antisense
Sequence Source Affymetrix Proprietary Database