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[183877_s_at]

Description B0511.9 /REP_DB=WormBase Gene ID /WP=CE26854 /TR=O61819 /GB=AAC17648.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 63      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 205.3
(3)
P 		140.7
(-0.3)
A 		195.8
(2.5)
A 		87.7
(-3)
A 		118
B 210.6
(3)
P 		155.4
(-0.3)
A 		196.1
(2.1)
A 		110.5
(-3)
A 		100
C 222.7
(3)
A 		103
(-3)
A 		172.1
(0.5)
A 		186.4
(1.2)
A 		120
avr 212.9
(3) 		133
(-2.7) 		188
(1.2) 		128.2
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 152.1
(2)
A 		158
(3)
A 		122.3
(-3)
A 		135.4
(-0.8)
A 		129.7
(-1.8)
A 		138.3
(-0.3)
A 		36
B 126.4
(-3)
A 		167.1
(3)
A 		136
(-1.6)
A 		128.6
(-2.7)
A 		145.3
(-0.2)
A 		152.1
(0.8)
P 		41
C 219.7
(3)
A 		145.9
(-2.8)
A 		143.3
(-3)
A 		171.2
(-0.8)
A 		146.7
(-2.7)
A 		179.3
(-0.2)
P 		76
avr 166.1
(3) 		157
(1.3) 		133.9
(-3) 		145.1
(-0.9) 		140.6
(-1.8) 		156.6
(1.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 74.8
(3)
P 		30.5
(-1.3)
A 		51.2
(0.7)
A 		12.8
(-3)
A 		62
B 67.2
(3)
P 		38.4
(-1)
A 		45.5
(0)
A 		23.5
(-3)
A 		44
C 73.7
(3)
A 		29.6
(-3)
A 		60
(1.1)
A 		31.4
(-2.8)
A 		44
avr 71.9
(3) 		32.8
(-1.8) 		52.2
(0.6) 		22.6
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 28
(-2.7)
A 		56.2
(3)
A 		26.6
(-3)
A 		34.3
(-1.4)
A 		39.1
(-0.5)
A 		33.7
(-1.6)
A 		30
B 44
(-0.5)
A 		55.6
(2.2)
A 		33
(-3)
A 		34.1
(-2.7)
A 		59
(3)
A 		56.7
(2.5)
P 		26
C 81.4
(3)
A 		44.5
(-1.7)
A 		36.5
(-2.7)
A 		34.4
(-3)
A 		47.5
(-1.3)
A 		60
(0.3)
P 		47
avr 51.1
(2.7) 		52.1
(3) 		32
(-3) 		34.3
(-2.3) 		48.5
(1.9) 		50.1
(2.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183877_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.964
Sequence Type Exemplar sequence
Representative Public ID B0511.9 NCBI
Target Description B0511.9 /REP_DB=WormBase Gene ID /WP=CE26854 /TR=O61819 /GB=AAC17648.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170919(10), NM_171844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170919 NCBI Caenorhabditis elegans B0511.9a (B0511.9) mRNA, complete cds. 10/11 None
NM_171844 NCBI Caenorhabditis elegans B0511.9b (B0511.9) mRNA, complete cds. 11/11 None
SNAP00000031158 ENSEMBL cdna:SNAP chromosome:CEL140:I:10647508:10648348:-1 9/11 None
GENEFINDER00000031171 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10647508:10648348:-1 11/11 None
B0511.9a ENSEMBL cdna:known chromosome:CEL140:I:10647270:10648351:-1 gene:B0511.9 10/11 None
B0511.9b ENSEMBL cdna:known chromosome:CEL140:I:10647508:10648349:-1 gene:B0511.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10647438-10648279(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0511.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15538 Hypothetical protein B0511.9b [Caenorhabditis elegans] ref|NP_740914.1| B0511.9b [Caenorhabditis elegans] 1.0E-77
blast AAM15538 Hypothetical protein B0511.9b [Caenorhabditis elegans] ref|NP_740914.1| B0511.9b [Caenorhabditis elegans] 1.0E-75
blast AAC17648 Hypothetical protein B0511.9a [Caenorhabditis elegans] ref|NP_740913.1| B0511.9a [Caenorhabditis elegans] 7.0E-71
blast AAM15538 Hypothetical protein B0511.9b [Caenorhabditis elegans] ref|NP_740914.1| B0511.9b [Caenorhabditis elegans] 3.0E-68
blast AAC17648 Hypothetical protein B0511.9a [Caenorhabditis elegans] ref|NP_740913.1| B0511.9a [Caenorhabditis elegans] 3.0E-68
blast AAC17648 Hypothetical protein B0511.9a [Caenorhabditis elegans] ref|NP_740913.1| B0511.9a [Caenorhabditis elegans] 3.0E-66
Sequence
Target Sequence 
>C. ELEGANS:183877_S_AT
aagagggtacttccagctgtgatcgtgccaaaatgcgaaatgatggatattgacgaaatg
gagccgatggatcagagtgagcctccacgtggcataactaggagaaatctcagatcggcg
gatagaaagaacagagacgttccaggaccaagtacgggagagtgcacgcgtacttccatt
gcaccgaatcgatgtgaaatgtcattcactgaagtgcagactttaacatctgctcgaact
cctgtcgctgctccaactctaacactttcgacgccagtcaaccctgtctcatcagctgaa
atgttgagagttatgccacctcgtgtaggtcgacgtccacgagcttctcgttctggtgac
aatgattcgccactcctcttcaacgcttatgatacaccacagcaaggaatcaatgacgaa
tctccaacaccctctgactctcccgaatctcctaatgctcatctctatggtgctactccc
ggcaatcctacttcaacttctggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGGGTACTTCCAGCTGTGATCG 14 155 91 Antisense
ATCAGAGTGAGCCTCCACGTGGCAT 610 27 161 Antisense
AGACTTTAACATCTGCTCGAACTCC 150 71 308 Antisense
TCTAACACTTTCGACGCCAGTCAAC 108 613 348 Antisense
TCAACCCTGTCTCATCAGCTGAAAT 549 631 368 Antisense
GTTGAGAGTTATGCCACCTCGTGTA 541 435 393 Antisense
TCCACGAGCTTCTCGTTCTGGTGAC 356 589 426 Antisense
CTGGTGACAATGATTCGCCACTCCT 295 241 443 Antisense
CACTCCTCTTCAACGCTTATGATAC 241 197 461 Antisense
ATCAATGACGAATCTCCAACACCCT 269 27 499 Antisense
GGCAATCCTACTTCAACTTCTGGAG 456 533 571 Antisense
Sequence Source Affymetrix Proprietary Database