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[183876_at]

Description C07G3.2 /REP_DB=WormBase Gene ID /WP=CE07993 /TR=O16327 /GB=AAB65376.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 01      6grp_total > 09      4grp_total > 55      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 103.7
(3)
P 		39.3
(-3)
A 		59.9
(-1.1)
P 		43.6
(-2.6)
A 		64
B 117
(3)
P 		46
(-1.8)
A 		78.7
(0.4)
A 		28.9
(-3)
A 		88
C 180.3
(3)
P 		42
(-2.1)
A 		92.2
(-0.3)
P 		18.8
(-3)
A 		162
avr 133.7
(3) 		42.4
(-2.3) 		76.9
(-0.3) 		30.4
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 209.1
(3)
P 		99
(-1.9)
P 		147.8
(0.3)
P 		181.8
(1.8)
P 		108.4
(-1.5)
P 		74
(-3)
A 		135
B 194.1
(3)
P 		154.5
(-0.1)
P 		153.8
(-0.2)
P 		130.4
(-2.1)
P 		118.5
(-3)
P 		118.8
(-3)
P 		76
C 127.7
(1.9)
P 		137.8
(2.5)
P 		38.7
(-3)
A 		146.9
(3)
P 		62.6
(-1.7)
P 		88.5
(-0.2)
P 		108
avr 177
(3) 		130.4
(-0.4) 		113.4
(-1.6) 		153
(1.3) 		96.5
(-2.8) 		93.8
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 37.7
(3)
P 		8.5
(-2.6)
A 		15.7
(-1.2)
P 		6.4
(-3)
A 		31
B 37.3
(3)
P 		11.3
(-2)
A 		18.2
(-0.7)
A 		6.2
(-3)
A 		31
C 59.7
(3)
P 		12.1
(-2.1)
A 		32.1
(0.1)
P 		3.2
(-3)
A 		57
avr 44.9
(3) 		10.6
(-2.2) 		22
(-0.5) 		5.3
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 38.5
(1.4)
P 		35.2
(0.7)
P 		32.2
(0)
P 		46.1
(3)
P 		32.7
(0.1)
P 		18
(-3)
A 		28
B 67.5
(3)
P 		51.4
(0.1)
P 		37.3
(-2.5)
P 		34.5
(-3)
P 		48.1
(-0.5)
P 		44.3
(-1.2)
P 		33
C 47.3
(3)
P 		42.1
(2.2)
P 		9.9
(-3)
A 		29.5
(0.1)
P 		20.3
(-1.3)
P 		29.6
(0.2)
P 		37
avr 51.1
(3) 		42.9
(1) 		26.5
(-3) 		36.7
(-0.5) 		33.7
(-1.2) 		30.6
(-2) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183876_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15484
Sequence Type Exemplar sequence
Representative Public ID C07G3.2 NCBI
Target Description C07G3.2 /REP_DB=WormBase Gene ID /WP=CE07993 /TR=O16327 /GB=AAB65376.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071582(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071582 NCBI Caenorhabditis elegans C07G3.2 (C07G3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000037807 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3523420:3524401:1 11/11 None
C07G3.2 ENSEMBL cdna:known chromosome:CEL140:V:3523420:3524401:1 gene:C07G3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037801 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3523419-3524401(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07G3.2
Entrez Gene 182379 Entrez gene
SwissProt O16327 EMBL-EBI
WormBase CE07993 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65376 Hypothetical protein C07G3.2 [Caenorhabditis elegans] ref|NP_503983.1| C07G3.2 [Caenorhabditis elegans] 1.0E-111
blast CAE62231 Hypothetical protein CBG06284 [Caenorhabditis briggsae] 9.0E-84
blast AAC17794 Hypothetical protein T24A6.7 [Caenorhabditis elegans] ref|NP_503984.1| T24A6.7 [Caenorhabditis elegans] 2.0E-70
Sequence
Target Sequence 
>C. ELEGANS:183876_AT
tgtacgtttccgaagaccgcacaaaagtattcgtgcttttctatgaagcagcatgcgtat
tttcaaatttctatccctccggctttgaggctaaacctgttgagaattttttgaaagata
cggagaaaaaggagaagctgctgaaattcacttgtagtgagcaatatttcatgtacaata
aggcgttgctagttggggacatggacatcgcagagcagattttgaaggaaactaatccaa
tgaagatgaagctgctgggaagaaagctgagcatgacaaaggagcaattgaaattatggt
ctcaaaaatcaaaggatgtaatgtaccgcgcatgtttggagaagttttctcaaaacgaag
attgtcggatgatcttgttccgtacccatggaatgaaacttgtggaggcctcaccaaccg
ataaaatttggggaattggtcttgacaaagcagaccagcggtgtgaagatgaacgaaact
ggagaggatcgaactggcttggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACGTTTCCGAAGACCGCACAAA 581 559 26 Antisense
AGCAGCATGCGTATTTTCAAATTTC 56 77 72 Antisense
CTATCCCTCCGGCTTTGAGGCTAAA 167 223 96 Antisense
GAAGCTGCTGAAATTCACTTGTAGT 504 343 159 Antisense
AAGGCGTTGCTAGTTGGGGACATGG 137 161 205 Antisense
GGGACATGGACATCGCAGAGCAGAT 393 495 221 Antisense
GGATGTAATGTACCGCGCATGTTTG 234 513 339 Antisense
GTCGGATGATCTTGTTCCGTACCCA 308 473 389 Antisense
TGAAACTTGTGGAGGCCTCACCAAC 171 573 419 Antisense
CTTGACAAAGCAGACCAGCGGTGTG 442 207 466 Antisense
GGAGAGGATCGAACTGGCTTGGAGA 330 517 506 Antisense
Sequence Source Affymetrix Proprietary Database