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[183875_at]

Description K07D4.6 /REP_DB=WormBase Gene ID /WP=CE19530 /TR=O76573 /GB=AAC26290.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 32.7
(-1.5)
A 		74.3
(1.7)
A 		13.2
(-3)
A 		91.5
(3)
A 		78
B 50
(3)
A 		15.4
(-3)
A 		45.7
(2.3)
A 		46.8
(2.4)
A 		35
C 30.4
(-1.6)
A 		42.4
(-0.8)
A 		10.8
(-3)
A 		96.3
(3)
A 		86
avr 37.7
(-1.4) 		44
(-0.7) 		23.2
(-3) 		78.2
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 15.5
(-1.1)
A 		4.2
(-3)
A 		39.7
(3)
A 		23.9
(0.3)
A 		38.6
(2.8)
A 		23.3
(0.2)
A 		36
B 30.1
(0.7)
A 		42.2
(3)
A 		32.1
(1.1)
A 		18.4
(-1.4)
A 		13.6
(-2.3)
A 		10.1
(-3)
A 		32
C 27.8
(0.6)
A 		43.3
(3)
A 		14.3
(-1.5)
A 		15
(-1.4)
A 		25.5
(0.2)
A 		5
(-3)
A 		38
avr 24.5
(1.1) 		29.9
(3) 		28.7
(2.6) 		19.1
(-0.8) 		25.9
(1.6) 		12.8
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.9
(1)
A 		16.1
(3)
A 		3.5
(-3)
A 		13.4
(1.7)
A 		13
B 15.9
(3)
A 		3.8
(-3)
A 		10.6
(0.4)
A 		10
(0.1)
A 		12
C 10.1
(0)
A 		12.2
(1.1)
A 		3.8
(-3)
A 		16.2
(3)
A 		12
avr 12.6
(2.5) 		10.7
(0.9) 		6
(-3) 		13.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.9
(-2.2)
A 		1.5
(-3)
A 		8.6
(1.2)
A 		6.1
(-0.3)
A 		11.6
(3)
A 		5.7
(-0.5)
A 		10
B 10.5
(0.9)
A 		14.1
(3)
A 		7.8
(-0.7)
A 		4.9
(-2.4)
A 		5.5
(-2)
A 		3.8
(-3)
A 		10
C 10.3
(1.5)
A 		13.2
(3)
A 		3.6
(-2)
A 		3
(-2.3)
A 		8.2
(0.4)
A 		1.7
(-3)
A 		12
avr 7.9
(1.3) 		9.6
(3) 		6.7
(0.1) 		4.7
(-2) 		8.4
(1.8) 		3.7
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183875_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5601
Sequence Type Exemplar sequence
Representative Public ID K07D4.6 NCBI
Target Description K07D4.6 /REP_DB=WormBase Gene ID /WP=CE19530 /TR=O76573 /GB=AAC26290.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062307 NCBI Caenorhabditis elegans K07D4.6 (K07D4.6) mRNA, complete cds. 11/11 None
SNAP00000021596 ENSEMBL cdna:SNAP chromosome:CEL140:II:4016821:4018695:-1 11/11 None
GENEFINDER00000021611 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4016190:4018695:-1 11/11 None
K07D4.6 ENSEMBL cdna:known chromosome:CEL140:II:4016821:4018695:-1 gene:K07D4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4016819-4018694(-) 86.15 100.0
Public Domain and Genome References
Gene Title
Ensembl K07D4.6
Entrez Gene 187110 Entrez gene
SwissProt O76573 EMBL-EBI
WormBase CE19530 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26290 Hypothetical protein K07D4.6 [Caenorhabditis elegans] ref|NP_494708.1| K07D4.6 [Caenorhabditis elegans] 1.0E-164
blast AAC26290 Hypothetical protein K07D4.6 [Caenorhabditis elegans] ref|NP_494708.1| K07D4.6 [Caenorhabditis elegans] 1.0E-150
blast CAE56300 Hypothetical protein CBG23956 [Caenorhabditis briggsae] 1.0E-105
blast CAE56300 Hypothetical protein CBG23956 [Caenorhabditis briggsae] 4.0E-95
blast AAC02602 Hypothetical protein F57H12.6 [Caenorhabditis elegans] ref|NP_501333.2| F57H12.6 [Caenorhabditis elegans] 4.0E-16
Sequence
Target Sequence 
>C. ELEGANS:183875_AT
gcagtatctacgaagccagtgacctggacgctgaggagattcaactagcgtgttctgtgg
atgatcgaattcctctgttccgaaccaccacaactacccattcttcattgacagcagtcc
cgggaaccactgaagaaacttcgacggagccagagaccactacaacgagcacaaccacaa
cggagcccaccacgacgacctcaactactacacagactacaacaactgtacctactagca
cctcgacaatttcaaccacttctacaactaccaccacacctaccaccacaaccacaacca
cctccactacaacctccgatgatctactttgggtcaaaattaccactacccctccaccac
cggacactacagaaggacgattgtcatttgaaattgagaagagcaataatacagtacccc
tgatcccttcgagaccacacaaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTATCTACGAAGCCAGTGACCT 628 311 659 Antisense
CACAACTACCCATTCTTCATTGACA 574 193 747 Antisense
TTCATTGACAGCAGTCCCGGGAACC 20 689 762 Antisense
TTCGACGGAGCCAGAGACCACTACA 160 695 798 Antisense
CGACCTCAACTACTACACAGACTAC 605 249 854 Antisense
ACAACAACTGTACCTACTAGCACCT 382 111 877 Antisense
CTCGACAATTTCAACCACTTCTACA 124 233 900 Antisense
ACAACCTCCGATGATCTACTTTGGG 644 111 967 Antisense
CCACCACCGGACACTACAGAAGGAC 294 273 1012 Antisense
AATAATACAGTACCCCTGATCCCTT 553 171 1063 Antisense
TGATCCCTTCGAGACCACACAAGGT 29 567 1079 Antisense
Sequence Source Affymetrix Proprietary Database