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[183874_s_at]

Description Y56A3A.7 /REP_DB=WormBase Gene ID /WP=CE28140 /TR=Q9U222 /GB=CAB60519.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 72      6grp_total > 91      4grp_total > 58      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 328.9
(1.3)
P 		370.4
(3)
P 		329.7
(1.3)
P 		227
(-3)
P 		143
B 274.5
(-1.6)
P 		327.8
(0.5)
P 		393.6
(3)
P 		237.1
(-3)
P 		157
C 251.1
(-2.5)
P 		429.5
(3)
P 		303
(-0.9)
P 		233.1
(-3)
P 		196
avr 284.8
(-0.8) 		375.9
(3) 		342.1
(1.6) 		232.4
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 323.3
(-1.3)
P 		280.3
(-3)
P 		326.4
(-1.2)
P 		408.6
(2)
P 		435.7
(3)
P 		297.6
(-2.3)
P 		155
B 403.5
(-0.5)
P 		316.8
(-3)
P 		402.8
(-0.5)
P 		524.3
(3)
P 		431.9
(0.3)
P 		404.4
(-0.5)
P 		208
C 326.7
(-1.3)
P 		391
(1.1)
P 		280
(-3)
P 		368.5
(0.3)
P 		442.6
(3)
P 		315.5
(-1.7)
P 		163
avr 351.2
(-1.8) 		329.4
(-3) 		336.4
(-2.6) 		433.8
(2.8) 		436.7
(3) 		339.2
(-2.5) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 119.8
(3)
P 		80.4
(0.3)
P 		86.2
(0.7)
P 		33.2
(-3)
P 		87
B 87.5
(2.5)
P 		81
(1.5)
P 		91.2
(3)
P 		50.5
(-3)
P 		41
C 83.1
(0.1)
P 		123.5
(3)
P 		105.6
(1.7)
P 		39.3
(-3)
P 		84
avr 96.8
(3) 		95
(2.8) 		94.3
(2.7) 		41
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 59.6
(-3)
P 		99.7
(0.3)
P 		71.1
(-2)
P 		103.6
(0.7)
P 		131.5
(3)
P 		72.5
(-1.9)
P 		72
B 140.4
(0.3)
P 		105.4
(-2.4)
P 		97.8
(-3)
P 		138.9
(0.2)
P 		175.5
(3)
P 		150.8
(1.1)
P 		78
C 121.1
(1.2)
P 		119.3
(1)
P 		71.3
(-3)
P 		74.1
(-2.8)
P 		143.2
(3)
P 		105.6
(-0.1)
P 		72
avr 107
(-0.7) 		108.1
(-0.6) 		80.1
(-3) 		105.5
(-0.8) 		150.1
(3) 		109.6
(-0.5) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183874_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6525
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.7 NCBI
Target Description Y56A3A.7 /REP_DB=WormBase Gene ID /WP=CE28140 /TR=Q9U222 /GB=CAB60519.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067156(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067156 NCBI Caenorhabditis elegans Y56A3A.7 (Y56A3A.7) mRNA, complete cds. 11/11 None
SNAP00000035204 ENSEMBL cdna:SNAP chromosome:CEL140:III:11939665:11949403:-1 11/11 None
GENEFINDER00000035220 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11940439:11946885:-1 11/11 None
Y56A3A.7 ENSEMBL cdna:known chromosome:CEL140:III:11933905:11946893:-1 gene:Y56A3A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11941036-11946881(-) 98.83 98.83
Public Domain and Genome References
Gene Title
Ensembl Y56A3A.7
Entrez Gene 176629 Entrez gene
SwissProt Q9U222 EMBL-EBI
WormBase CE28140 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60519 Hypothetical protein Y56A3A.7 [Caenorhabditis elegans] ref|NP_499557.1| Y56A3A.7 [Caenorhabditis elegans] 1.0E-174
blast CAB60519 Hypothetical protein Y56A3A.7 [Caenorhabditis elegans] ref|NP_499557.1| Y56A3A.7 [Caenorhabditis elegans] 1.0E-164
blast CAE67750 Hypothetical protein CBG13325 [Caenorhabditis briggsae] 1.0E-115
blast CAE67750 Hypothetical protein CBG13325 [Caenorhabditis briggsae] 1.0E-107
blast CAB60519 Hypothetical protein Y56A3A.7 [Caenorhabditis elegans] ref|NP_499557.1| Y56A3A.7 [Caenorhabditis elegans] 6.0E-86
blast CAE67750 Hypothetical protein CBG13325 [Caenorhabditis briggsae] 3.0E-64
Sequence
Target Sequence 
>C. ELEGANS:183874_S_AT
gaagctcgcgtctatgaacgctcgacgaaagagacttcaagagattcgcaaaatgttgga
gaaacaggaacacgagaaggagaaactcgatgcggcgatcagtaattcggcggtggcggt
acagaatgatggagaaggaatcgccctaactcccgaaactccacgaccatcccaagaaga
tgaagctgaagccccagcagcagctgaaactactgtagtttcagctccagtagctgcttc
agaggatattgatgaggaggaagacggagaagttaccgaaaaatcattggatgatatttt
agagaacgccagagctaatttaagcaatttgacggcaatgcgggaacggctggagcatat
taaggagacgggcggtgcagatttgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCGCGTCTATGAACGCTCGA 354 343 834 Antisense
GAACGCTCGACGAAAGAGACTTCAA 114 347 849 Antisense
GATGCGGCGATCAGTAATTCGGCGG 162 413 922 Antisense
GTAATTCGGCGGTGGCGGTACAGAA 480 463 935 Antisense
TGGAGAAGGAATCGCCCTAACTCCC 671 547 963 Antisense
ACTCCACGACCATCCCAAGAAGATG 467 99 991 Antisense
GATGAAGCTGAAGCCCCAGCAGCAG 183 413 1012 Antisense
AAACTACTGTAGTTTCAGCTCCAGT 629 127 1040 Antisense
AGCTCCAGTAGCTGCTTCAGAGGAT 431 81 1056 Antisense
TGACGGCAATGCGGGAACGGCTGGA 265 571 1163 Antisense
GGAGACGGGCGGTGCAGATTTGAAT 143 519 1197 Antisense
Sequence Source Affymetrix Proprietary Database