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[183872_at]

Description F35G12.7 /REP_DB=WormBase Gene ID /WP=CE00976 /TR=Q20051 /GB=CAA86327.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 74      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_total > 64      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 134.8
(-3)
P 		137.1
(-2.9)
P 		141.1
(-2.9)
P 		390.8
(3)
P 		256
B 150.2
(-2.7)
P 		188.7
(-1.2)
P 		143
(-3)
P 		291.5
(3)
P 		149
C 189.9
(-2.8)
P 		208.6
(-2.2)
P 		183.6
(-3)
P 		361.8
(3)
P 		178
avr 158.3
(-2.9) 		178.1
(-2.3) 		155.9
(-3) 		348
(3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 67.6
(-3)
A 		158.5
(-0)
P 		250.9
(3)
P 		187.5
(0.9)
P 		152.7
(-0.2)
P 		157.1
(-0.1)
P 		183
B 146.8
(-2)
P 		147.7
(-2)
P 		251.3
(3)
P 		125.8
(-3)
P 		194.6
(0.3)
P 		202
(0.6)
P 		126
C 113.3
(-3)
P 		140.3
(-1.1)
P 		166.7
(0.7)
P 		170.9
(1)
P 		162.1
(0.4)
P 		199.8
(3)
P 		87
avr 109.2
(-3) 		148.8
(-0.9) 		223
(3) 		161.4
(-0.2) 		169.8
(0.2) 		186.3
(1.1) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 49.1
(1.2)
P 		29.8
(-3)
P 		36.9
(-1.4)
P 		57.2
(3)
P 		27
B 47.9
(0.1)
P 		46.6
(-0.2)
P 		33.1
(-3)
P 		62.1
(3)
P 		29
C 62.9
(1.4)
P 		60
(-3)
P 		64
(3)
P 		61
(-1.5)
P 		4
avr 53.3
(0.4) 		45.5
(-2.7) 		44.7
(-3) 		60.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 12.5
(-3)
A 		56.4
(3)
P 		54.7
(2.8)
P 		47.6
(1.8)
P 		46.1
(1.6)
P 		38.3
(0.5)
P 		44
B 51.1
(-0.7)
P 		49.2
(-0.9)
P 		61
(0.6)
P 		33.3
(-3)
P 		79.1
(3)
P 		75.3
(2.5)
P 		46
C 42
(-1.6)
P 		42.8
(-1.4)
P 		42.4
(-1.5)
P 		34.4
(-3)
P 		52.4
(0.3)
P 		66.9
(3)
P 		33
avr 35.2
(-3) 		49.5
(0.4) 		52.7
(1.2) 		38.4
(-2.2) 		59.2
(2.8) 		60.2
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7662
Sequence Type Exemplar sequence
Representative Public ID F35G12.7 NCBI
Target Description F35G12.7 /REP_DB=WormBase Gene ID /WP=CE00976 /TR=Q20051 /GB=CAA86327.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065533(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065533 NCBI Caenorhabditis elegans F35G12.7 (F35G12.7) mRNA, complete cds. 9/11 None
F35G12.7 ENSEMBL cdna:known chromosome:CEL140:III:4586649:4587241:-1 gene:F35G12.7 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042242 8/11 Cross Hyb Matching Probes None
GENEFINDER00000042259 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4586775-4587179(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35G12.7
Entrez Gene 185322 Entrez gene
SwissProt Q20051 EMBL-EBI
WormBase CE32184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86327 Hypothetical protein F35G12.7 [Caenorhabditis elegans] ref|NP_497934.2| F35G12.7 [Caenorhabditis elegans] 1.0E-59
blast CAE71178 Hypothetical protein CBG18035 [Caenorhabditis briggsae] 1.0E-40
blast NP_296015 periplasmic divalent cation tolerance protein [Deinococcus radiodurans R1] gb|AAF11840.1| periplasmic divalent cation tolerance protein [Deinococcus radiodurans] pir||H75291 periplasmic divalent cation tolerance protein - Deinococcus radiodurans (strain R1) 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR004323 EMBL-EBI CutA1 divalent ion tolerance protein 1.3E-38
Sequence
Target Sequence 
>C. ELEGANS:183872_AT
gttgtcgcgtatgtgacagctccgagtaaggaagttgcaatgactgtggcaagaacaact
gtcactgaagcattagccgcttgcgccaatgttattccggaagtcacatctgtcgtgttc
gatctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTCGCGTATGTGACAGCTCCGA 632 435 16 Antisense
GCGTATGTGACAGCTCCGAGTAAGG 119 291 22 Antisense
GACAGCTCCGAGTAAGGAAGTTGCA 355 363 30 Antisense
GGAAGTTGCAATGACTGTGGCAAGA 441 531 45 Antisense
GCAAGAACAACTGTCACTGAAGCAT 653 319 64 Antisense
GTCACTGAAGCATTAGCCGCTTGCG 322 465 76 Antisense
ATTAGCCGCTTGCGCCAATGTTATT 639 11 87 Antisense
GCTTGCGCCAATGTTATTCCGGAAG 303 303 94 Antisense
GTTATTCCGGAAGTCACATCTGTCG 201 447 106 Antisense
GAAGTCACATCTGTCGTGTTCGATC 103 337 115 Antisense
TCACATCTGTCGTGTTCGATCTCTT 141 629 119 Antisense
Sequence Source Affymetrix Proprietary Database