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[183871_at]

Description Y39B6A.D /REP_DB=WormBase Gene ID /WP=CE24232 /TR=Q9NEI8 /GB=CAB61061.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 22      6grp_total > 73      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 43.1
(-2.8)
A 		39.3
(-3)
A 		56.3
(-2.2)
P 		165.4
(3)
P 		126
B 24.2
(-3)
P 		47.6
(-1.8)
A 		64.4
(-0.9)
P 		140.7
(3)
P 		117
C 40.6
(-3)
A 		63.4
(-2.2)
P 		42.4
(-2.9)
P 		217.5
(3)
P 		177
avr 36
(-3) 		50.1
(-2.4) 		54.4
(-2.2) 		174.5
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 46.6
(0.3)
A 		7.1
(-3)
A 		49.8
(0.6)
A 		66.3
(2)
P 		78.7
(3)
P 		41.9
(-0.1)
P 		72
B 35.3
(-3)
A 		45.7
(-1.3)
P 		71.6
(3)
P 		68.8
(2.5)
M 		61.6
(1.3)
P 		60.4
(1.1)
P 		36
C 29.9
(-3)
A 		71.3
(0.1)
P 		63.2
(-0.5)
P 		110.5
(3)
P 		58.1
(-0.9)
P 		56.6
(-1)
A 		81
avr 37.3
(-3) 		41.4
(-2.4) 		61.5
(0.3) 		81.9
(3) 		66.1
(0.9) 		53
(-0.9) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 15.7
(-0.2)
A 		8.5
(-3)
A 		14.7
(-0.6)
P 		24.2
(3)
P 		16
B 7.7
(-3)
P 		11.8
(-1.9)
A 		14.9
(-1.1)
P 		30
(3)
P 		22
C 13.4
(-3)
A 		18.2
(-1.8)
P 		14.8
(-2.6)
P 		36.7
(3)
P 		23
avr 12.3
(-3) 		12.8
(-2.8) 		14.8
(-2.2) 		30.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8.6
(-1.3)
A 		2.5
(-3)
A 		10.8
(-0.7)
A 		16.8
(1)
P 		23.7
(3)
P 		10.2
(-0.8)
P 		21
B 12.3
(-3)
A 		15.2
(-1.6)
P 		17.4
(-0.6)
P 		18.2
(-0.2)
M 		25
(3)
P 		22.5
(1.8)
P 		13
C 11.1
(-3)
A 		21.8
(2.8)
P 		16.1
(-0.3)
P 		22.2
(3)
P 		18.8
(1.2)
P 		18.9
(1.2)
A 		11
avr 10.7
(-3) 		13.2
(-1.7) 		14.8
(-0.9) 		19.1
(1.3) 		22.5
(3) 		17.2
(0.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19428
Sequence Type Exemplar sequence
Representative Public ID Y39B6A.D NCBI
Target Description Y39B6A.D /REP_DB=WormBase Gene ID /WP=CE24232 /TR=Q9NEI8 /GB=CAB61061.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171566 NCBI Caenorhabditis elegans Y39B6A.41 (Y39B6A.41) mRNA, complete cds. 11/11 None
Y39B6A.41 ENSEMBL cdna:known chromosome:CEL140:V:18973513:18980549:-1 gene:Y39B6A.41 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030722 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18973512-18980549(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.41
Entrez Gene 189732 Entrez gene
SwissProt Q9NEI8 EMBL-EBI
WormBase CE24232 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61061 Hypothetical protein Y39B6A.41 [Caenorhabditis elegans] ref|NP_741656.1| Y39B6A.41 [Caenorhabditis elegans] 0.0
blast CAE56191 Hypothetical protein CBG23814 [Caenorhabditis briggsae] 0.0
blast AAA19732 glucose transport protein 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 2.9E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741656.1 12 13-35,55-77,90-112,117-139,152-174,179-201,266-285,305-327,334-351,364-386,407-426,430-449
Y39B6A.41 12 13-35,55-77,90-112,117-139,152-174,179-201,266-285,305-327,334-351,364-386,407-426,430-449
Sequence
Target Sequence 
>C. ELEGANS:183871_AT
aatcatagattctccctattcctggtcttcatgtgctccctggttccagtattctcaggc
ctaaacattaaatctcaatacttggtagatatattaatatcatatggtctaacacaatcc
aactcaacaatagcaataatggtaatcaataccgtatccctgccggtttccttcatcgcc
ccactgattatcgaaaaatacgggcggcgcccaatttttgtattactcacatggctatgc
gcctttgaatggctcggaatgagtattcctgaaatggcgaataatttcggttggaatatc
gattttcgatggattttcgcgtgtttttcagcgattttaggccaatgtgctgtcaatttg
ggaatgttggttatggcaccgattatgatttcggagttgtgtccgcataatataagggca
acggtttcgcagtttacacaggtgccacctatcggtattgcagtgttggaggtgttcatg
ttcccaacattacggtcacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATAGATTCTCCCTATTCCTGG 270 171 799 Antisense
CTGGTTCCAGTATTCTCAGGCCTAA 282 241 838 Antisense
TAATCAATACCGTATCCCTGCCGGT 200 635 941 Antisense
TTCATCGCCCCACTGATTATCGAAA 248 689 970 Antisense
TACGGGCGGCGCCCAATTTTTGTAT 25 643 997 Antisense
GTATTACTCACATGGCTATGCGCCT 477 453 1018 Antisense
GGCTATGCGCCTTTGAATGGCTCGG 534 537 1031 Antisense
GATGGATTTTCGCGTGTTTTTCAGC 646 405 1106 Antisense
GGCAACGGTTTCGCAGTTTACACAG 396 529 1215 Antisense
AGGTGCCACCTATCGGTATTGCAGT 394 57 1238 Antisense
ATGTTCCCAACATTACGGTCACAAT 372 47 1276 Antisense
Sequence Source Affymetrix Proprietary Database