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[183870_at]

Description C01G10.5 /REP_DB=WormBase Gene ID /WP=CE07814 /TR=Q93165 /GB=CAB02707.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 62      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 225.2
(3)
P 		118
(-0.2)
A 		194
(2.1)
P 		22.3
(-3)
A 		203
B 177.5
(3)
P 		104.8
(0.5)
A 		172.2
(2.8)
P 		5
(-3)
A 		173
C 199.4
(3)
P 		162.8
(0.9)
A 		121.6
(-1.5)
P 		94.8
(-3)
A 		105
avr 200.7
(3) 		128.5
(0.3) 		162.6
(1.6) 		40.7
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 247.4
(1)
A 		263.5
(1.4)
P 		322.7
(3)
P 		304.3
(2.5)
A 		155.6
(-1.5)
P 		101.2
(-3)
A 		222
B 239.2
(2.5)
P 		248.2
(2.7)
A 		257.5
(3)
P 		158
(0)
A 		109.3
(-1.4)
A 		57
(-3)
A 		201
C 346.8
(3)
P 		208.2
(-0)
P 		253.5
(1)
P 		218
(0.2)
A 		120.8
(-1.9)
M 		70.4
(-3)
A 		276
avr 277.8
(3) 		240
(1.9) 		277.9
(3) 		226.8
(1.5) 		128.6
(-1.4) 		76.2
(-3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 82
(3)
P 		25.6
(-1.3)
A 		50.7
(0.6)
P 		3.3
(-3)
A 		79
B 56.6
(3)
P 		25.9
(-0.3)
A 		39.9
(1.2)
P 		1.1
(-3)
A 		56
C 66
(3)
P 		46.8
(0.7)
A 		42.4
(0.2)
P 		16
(-3)
A 		50
avr 68.2
(3) 		32.8
(-0.5) 		44.3
(0.7) 		6.8
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 45.6
(-1.2)
A 		93.7
(3)
P 		70.3
(1)
P 		77.2
(1.6)
A 		46.9
(-1.1)
P 		24.6
(-3)
A 		69
B 83.2
(3)
P 		82.6
(2.9)
A 		62.5
(1)
P 		41.8
(-1)
A 		44.4
(-0.8)
A 		21.3
(-3)
A 		62
C 128.5
(3)
P 		63.5
(-0.7)
P 		64.5
(-0.7)
P 		43.8
(-1.8)
A 		39.1
(-2.1)
M 		23.6
(-3)
A 		105
avr 85.8
(3) 		79.9
(2.4) 		65.8
(1.1) 		54.3
(-0) 		43.5
(-1.1) 		23.2
(-3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183870_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13243
Sequence Type Exemplar sequence
Representative Public ID C01G10.5 NCBI
Target Description C01G10.5 /REP_DB=WormBase Gene ID /WP=CE07814 /TR=Q93165 /GB=CAB02707.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074317 NCBI Caenorhabditis elegans C01G10.5 (C01G10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000004640 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15091013:15092085:-1 9/11 None
C01G10.5 ENSEMBL cdna:known chromosome:CEL140:V:15091013:15092085:-1 gene:C01G10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004623 3/11 Cross Hyb Matching Probes None
SNAP00000004624 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15091012-15092085(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G10.5
Entrez Gene 182082 Entrez gene
SwissProt Q93165 EMBL-EBI
WormBase CE07814 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506718.1 1 4-26
C01G10.5 1 4-26
GENEFINDER00000004640 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:183870_AT
aattctttactttgatcgctactcttttggttcttctctccacaacgagtgcttattata
catattactactatccaaataacaataataatggatacaactacaacaatggatacacta
catactactattacccgaacaacaataacaatggatactactacgataatggatacaaca
ataatggatacaccacttattattatacttatggaaagaactgttatttgcaggtagacc
ttgatatttttaatgtcaaatttgcgcgtaagatttactattaccctgatggcacctaca
ataatggatactactactatccgagcaacgataacagtggtggatattattataatggat
actactatgatactggatacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTTTACTTTGATCGCTACTCT 77 177 17 Antisense
TACTTTGATCGCTACTCTTTTGGTT 56 645 24 Antisense
TCTTCTCTCCACAACGAGTGCTTAT 468 617 48 Antisense
GATACACTACATACTACTATTACCC 568 423 128 Antisense
ACATACTACTATTACCCGAACAACA 343 97 136 Antisense
GGATACACCACTTATTATTATACTT 461 511 202 Antisense
GCAGGTAGACCTTGATATTTTTAAT 621 311 246 Antisense
AAGATTTACTATTACCCTGATGGCA 406 155 286 Antisense
ATTACCCTGATGGCACCTACAATAA 346 13 296 Antisense
ATACTACTACTATCCGAGCAACGAT 341 21 324 Antisense
GATACTACTATGATACTGGATACAC 1 423 374 Antisense
Sequence Source Affymetrix Proprietary Database