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[183869_at]

Description C18D11.3 /REP_DB=WormBase Gene ID /WP=CE18514 /TR=Q9XTZ3 /GB=CAB07321.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 128.4
(-0.9)
A 		138
(0.4)
A 		113.1
(-3)
A 		157
(3)
A 		44
B 165.4
(3)
A 		137.1
(-0.6)
A 		136.6
(-0.7)
A 		118.3
(-3)
A 		47
C 141.7
(3)
A 		131.3
(0.9)
A 		111.7
(-3)
A 		130.4
(0.7)
A 		30
avr 145.2
(3) 		135.5
(0.6) 		120.5
(-3) 		135.2
(0.6) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 65.8
(0.5)
A 		43.6
(-3)
A 		43.8
(-3)
A 		59.6
(-0.5)
A 		82
(3)
A 		68
(0.8)
A 		38
B 72.8
(1.3)
A 		84.3
(2.2)
A 		94.1
(3)
A 		17.9
(-3)
A 		62.1
(0.5)
A 		47.3
(-0.7)
A 		76
C 40.4
(-0.6)
A 		75
(2.1)
A 		78
(2.4)
A 		86
(3)
A 		9.2
(-3)
A 		56.9
(0.7)
A 		77
avr 59.7
(-0.5) 		67.6
(1.7) 		72
(3) 		54.5
(-2) 		51.1
(-3) 		57.4
(-1.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 46.7
(3)
A 		30
(-1.2)
A 		29.6
(-1.3)
A 		23
(-3)
A 		24
B 52.7
(3)
A 		33.9
(-1.1)
A 		31.7
(-1.6)
A 		25.2
(-3)
A 		28
C 46.9
(3)
A 		37.7
(0.8)
A 		38.9
(1.1)
A 		22
(-3)
A 		25
avr 48.8
(3) 		33.9
(-0.5) 		33.4
(-0.6) 		23.4
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 12.1
(-2)
A 		15.5
(-0.6)
A 		9.5
(-3)
A 		15.1
(-0.8)
A 		24.7
(3)
A 		16.6
(-0.2)
A 		15
B 25.3
(2.3)
A 		28.1
(3)
A 		22.8
(1.6)
A 		4.7
(-3)
A 		25.2
(2.3)
A 		17.6
(0.3)
A 		23
C 15
(0.6)
A 		22.9
(3)
A 		19.8
(2.1)
A 		17.3
(1.3)
A 		3
(-3)
A 		19
(1.8)
A 		20
avr 17.5
(0.1) 		22.2
(3) 		17.4
(0.1) 		12.4
(-3) 		17.6
(0.2) 		17.7
(0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7672
Sequence Type Exemplar sequence
Representative Public ID C18D11.3 NCBI
Target Description C18D11.3 /REP_DB=WormBase Gene ID /WP=CE18514 /TR=Q9XTZ3 /GB=CAB07321.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067131 NCBI Caenorhabditis elegans C18D11.3 (C18D11.3) mRNA, complete cds. 11/11 None
SNAP00000031597 ENSEMBL cdna:SNAP chromosome:CEL140:III:11819908:11824316:1 11/11 None
GENEFINDER00000031600 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11823668:11824316:1 11/11 None
C18D11.3 ENSEMBL cdna:known chromosome:CEL140:III:11823668:11824316:1 gene:C18D11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11823663-11824312(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18D11.3
Entrez Gene 182788 Entrez gene
SwissProt Q9XTZ3 EMBL-EBI
WormBase CE18514 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07321 Hypothetical protein C18D11.3 [Caenorhabditis elegans] ref|NP_499532.1| C18D11.3 [Caenorhabditis elegans] 3.0E-65
blast CAB07321 Hypothetical protein C18D11.3 [Caenorhabditis elegans] ref|NP_499532.1| C18D11.3 [Caenorhabditis elegans] 1.0E-51
blast CAE67723 Hypothetical protein CBG13298 [Caenorhabditis briggsae] 4.0E-40
blast CAE67723 Hypothetical protein CBG13298 [Caenorhabditis briggsae] 1.0E-36
Sequence
Target Sequence 
>C. ELEGANS:183869_AT
gcaagacaagctccaagtctctcacggaacttgtggacagtctcaccaaaaagaatttga
acggagcagctcgtccgcaatctacaccgcaggaagcggaaaatgtgaaagtagtcgcga
tgaagcgcaagattccgatggttcacgcgccgaagattttgaagaaaaagaaggcaaatg
gacatcacaataataataacaacaatctgaaagttctggatgatgcaaacccaaagagag
tacacttcgatgtaaggcataaaatggcgcgaaattcttcgatgctaatttttttacaat
ttcagattgagcagtttctgtcacgagaagcaggaaaaggcgaccgagtcgaggctcgtg
agcgaatgctcgcttctttgggagctgctccggcgaagcgtggctacgtcaactacaagg
atctgaagatcgatcgagcggcgaagaaggccgaggcgaaggctcacgcagagatgaacc
acgccaatagtctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGACAAGCTCCAAGTCTCTCAC 287 321 59 Antisense
GGAACTTGTGGACAGTCTCACCAAA 14 529 84 Antisense
TTGAACGGAGCAGCTCGTCCGCAAT 389 699 115 Antisense
TCCGCAATCTACACCGCAGGAAGCG 99 597 132 Antisense
ATGGTTCACGCGCCGAAGATTTTGA 638 49 196 Antisense
AAAGGCGACCGAGTCGAGGCTCGTG 399 121 394 Antisense
GCGAATGCTCGCTTCTTTGGGAGCT 403 289 420 Antisense
TTTGGGAGCTGCTCCGGCGAAGCGT 637 435 435 Antisense
GAAGCGTGGCTACGTCAACTACAAG 703 341 453 Antisense
GAAGGCTCACGCAGAGATGAACCAC 558 333 516 Antisense
AGATGAACCACGCCAATAGTCTCTC 572 67 530 Antisense
Sequence Source Affymetrix Proprietary Database