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[183868_at]

Description K12H6.8 /REP_DB=WormBase Gene ID /WP=CE20011 /TR=Q9N5H0 /GB=AAF39937.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 19
(1.4)
A 		22.9
(3)
A 		8.7
(-3)
A 		9.6
(-2.6)
A 		14
B 10.6
(-3)
A 		19.2
(-1.7)
A 		12.3
(-2.7)
A 		49.8
(3)
A 		39
C 7.7
(-2.8)
A 		8.7
(-2.6)
A 		32.3
(3)
A 		7
(-3)
A 		25
avr 12.4
(-3) 		16.9
(-0.2) 		17.8
(0.3) 		22.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 62.3
(3)
A 		8.6
(-2.4)
A 		13.9
(-1.9)
A 		9.2
(-2.4)
A 		13.1
(-2)
A 		2.8
(-3)
A 		60
B 12.2
(-1.4)
A 		8.8
(-1.9)
A 		26.2
(0.8)
A 		7.4
(-2.1)
A 		40
(3)
A 		2
(-3)
A 		38
C 24.4
(-1.1)
A 		8.6
(-2.5)
A 		3.8
(-3)
A 		25.9
(-1)
A 		69
(3)
A 		3.6
(-3)
A 		65
avr 33
(1.8) 		8.7
(-2.1) 		14.6
(-1.1) 		14.2
(-1.2) 		40.7
(3) 		2.8
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.9
(3)
A 		5
(0.9)
A 		2.3
(-2)
A 		1.4
(-3)
A 		6
B 3.4
(-2.5)
A 		4.7
(-1.5)
A 		2.8
(-3)
A 		10.6
(3)
A 		8
C 2.5
(-2.2)
A 		2.5
(-2.2)
A 		11.3
(3)
A 		1.2
(-3)
A 		10
avr 4.3
(-2.1) 		4.1
(-3) 		5.5
(3) 		4.4
(-1.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.5
(3)
A 		3.1
(-1.7)
A 		3
(-1.7)
A 		2.3
(-2.1)
A 		4
(-1.2)
A 		0.7
(-3)
A 		11
B 4.3
(-1.6)
A 		2.9
(-2.2)
A 		6.4
(-0.8)
A 		1.9
(-2.5)
A 		16.3
(3)
A 		0.7
(-3)
A 		16
C 9
(-0.7)
A 		2.6
(-2.5)
A 		1
(-3)
A 		5.2
(-1.8)
A 		22.3
(3)
A 		1.2
(-2.9)
A 		21
avr 8.3
(0.3) 		2.9
(-2.1) 		3.5
(-1.8) 		3.1
(-2) 		14.2
(3) 		0.9
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5292
Sequence Type Exemplar sequence
Representative Public ID K12H6.8 NCBI
Target Description K12H6.8 /REP_DB=WormBase Gene ID /WP=CE20011 /TR=Q9N5H0 /GB=AAF39937.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061976 NCBI Caenorhabditis elegans K12H6.8 (K12H6.8) mRNA, complete cds. 11/11 None
SNAP00000024516 ENSEMBL cdna:SNAP chromosome:CEL140:II:2828129:2828566:1 11/11 None
K12H6.8 ENSEMBL cdna:known chromosome:CEL140:II:2828129:2828566:1 gene:K12H6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024525 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2828127-2828565(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H6.8
Entrez Gene 187346 Entrez gene
SwissProt Q9N5H0 EMBL-EBI
WormBase CE20011 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494377 K12H6.8 [Caenorhabditis elegans] gb|AAF39937.1| Hypothetical protein K12H6.8 [Caenorhabditis elegans] 1.0E-56
blast NP_494375 K12H6.9 [Caenorhabditis elegans] gb|AAF39938.2| Hypothetical protein K12H6.9 [Caenorhabditis elegans] 4.0E-14
Sequence
Target Sequence 
>C. ELEGANS:183868_AT
tgaggtcagcgagctttgtggtccgattaactgccacgttctggctgctgctgctgacaa
gtttgacatcgaccgctacctcggaccgaacgatgtgagacgagtgcaaattctgagcgc
tcacggttcatctcgatgggctcgcgctctggctgcaatcacagagtacgacggcttcgc
tccaaagttcaactatgcactccttgaccttactcagagcccgactagcccgaccggata
cacaatgtccaagggattcatctgcacacatatcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGTCAGCGAGCTTTGTGGTCCG 57 569 18 Antisense
GTCCGATTAACTGCCACGTTCTGGC 270 471 38 Antisense
TGGCTGCTGCTGCTGACAAGTTTGA 408 545 59 Antisense
TGACAAGTTTGACATCGACCGCTAC 384 571 72 Antisense
CCGCTACCTCGGACCGAACGATGTG 597 255 90 Antisense
GAGACGAGTGCAAATTCTGAGCGCT 103 395 114 Antisense
AATTCTGAGCGCTCACGGTTCATCT 525 177 126 Antisense
TCGCGCTCTGGCTGCAATCACAGAG 106 599 159 Antisense
ATCACAGAGTACGACGGCTTCGCTC 88 27 175 Antisense
AAGTTCAACTATGCACTCCTTGACC 405 155 202 Antisense
GGGATTCATCTGCACACATATCATG 136 497 270 Antisense
Sequence Source Affymetrix Proprietary Database