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[183866_s_at]

Description ZK742.2 /REP_DB=WormBase Gene ID /WP=CE07638 /TR=Q23088 /GB=AAB04980.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_high_8_8 > 20      6grp_highest_nonorm > 91      6grp_total > 75      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 101.4
(-0.3)
P 		181.4
(3)
P 		34.2
(-3)
A 		159.8
(2.1)
P 		147
B 118.5
(-1.2)
P 		102.7
(-2.6)
P 		98.4
(-3)
P 		165.5
(3)
P 		67
C 184
(3)
P 		119.6
(-3)
P 		149.3
(-0.2)
P 		157.4
(0.5)
P 		64
avr 134.6
(0.6) 		134.6
(0.6) 		94
(-3) 		160.9
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 106.7
(-3)
P 		182.1
(-0.9)
P 		195.1
(-0.5)
P 		272.7
(1.6)
P 		177.4
(-1)
P 		322.1
(3)
P 		215
B 165.9
(-2.4)
P 		155.7
(-3)
P 		233.3
(1.3)
P 		234.6
(1.4)
P 		199.8
(-0.6)
P 		264.2
(3)
P 		109
C 144.8
(-2.3)
P 		250.8
(1.7)
P 		179.6
(-1)
P 		234
(1.1)
P 		125.9
(-3)
P 		284.4
(3)
P 		159
avr 139.1
(-3) 		196.2
(-0.7) 		202.7
(-0.5) 		247.1
(1.3) 		167.7
(-1.9) 		290.2
(3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 36.9
(2.5)
P 		39.4
(3)
P 		9
(-3)
A 		23.4
(-0.2)
P 		30
B 37.8
(3)
P 		25.4
(-2)
P 		22.8
(-3)
P 		35.3
(2)
P 		15
C 60.9
(3)
P 		34.4
(-1.6)
P 		52
(1.4)
P 		26.5
(-3)
P 		34
avr 45.2
(3) 		33.1
(-1.2) 		27.9
(-3) 		28.4
(-2.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 19.7
(-3)
P 		64.7
(1.6)
P 		42.5
(-0.7)
P 		69.2
(2.1)
P 		53.5
(0.5)
P 		78.4
(3)
P 		59
B 57.7
(-2.2)
P 		51.8
(-3)
P 		56.6
(-2.4)
P 		62.1
(-1.7)
P 		81.2
(0.8)
P 		98.5
(3)
P 		47
C 53.7
(-1.6)
P 		76.5
(0.9)
P 		45.7
(-2.5)
P 		47.1
(-2.3)
P 		40.8
(-3)
P 		95.2
(3)
P 		54
avr 43.7
(-3) 		64.3
(-0.4) 		48.3
(-2.4) 		59.5
(-1) 		58.5
(-1.1) 		90.7
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183866_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11826
Sequence Type Exemplar sequence
Representative Public ID ZK742.2 NCBI
Target Description ZK742.2 /REP_DB=WormBase Gene ID /WP=CE07638 /TR=Q23088 /GB=AAB04980.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072611 NCBI Caenorhabditis elegans ZK742.2 (ZK742.2) mRNA, complete cds. 11/11 None
SNAP00000028062 ENSEMBL cdna:SNAP chromosome:CEL140:V:7804150:7806434:-1 11/11 None
GENEFINDER00000028070 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7804150:7806434:-1 11/11 None
ZK742.2 ENSEMBL cdna:known chromosome:CEL140:V:7804113:7806434:-1 gene:ZK742.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7804150-7806435(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK742.2
Entrez Gene 179158 Entrez gene
SwissProt Q23088 EMBL-EBI
WormBase CE07638 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04980 Hypothetical protein ZK742.2 [Caenorhabditis elegans] ref|NP_505012.1| ZK742.2 [Caenorhabditis elegans] 0.0
blast CAE73181 Hypothetical protein CBG20579 [Caenorhabditis briggsae] 1.0E-168
blast XP_234083 PREDICTED: similar to KIAA1530 protein [Rattus norvegicus] 6.0E-21
Sequence
Target Sequence 
>C. ELEGANS:183866_S_AT
aaatcaagacggtaccattcgggcttgacctaaaatactggggagaggagagaaaagatg
ttgaagttccgaaaaacaatgcagattgccatagattctggaggtcggccgatgaaggaa
ctgttgctgggaaagcacaacaaagcatctacactcaacgacaatatacgtttattggaa
aagctccagacaatcggaaagtctgtttggcaaagatgaagagtggaaagctttgtccga
gaaaagactattacacatgccctcttcatggaaaaattgtagatcgcgatgacgagggga
gacccattaacgaggaggatcggcttgaagaaaattacagaaaagagcaaaaccatctga
aggaagcagacaagatccggcagatgatcgaaaaggaatacgaatcaaaaacgaaacggc
gaaagaagcacgacgtggatacaactgcctcggaagatgttagaaatcggcttcagaaga
agctgctggacccgaaaaccatccaaagagtgtccgctgatctagatgcatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAAGACGGTACCATTCGGGCT 673 113 1214 Antisense
TACCATTCGGGCTTGACCTAAAATA 635 649 1226 Antisense
ATAGATTCTGGAGGTCGGCCGATGA 19 23 1304 Antisense
CGGCCGATGAAGGAACTGTTGCTGG 346 241 1319 Antisense
CAAAGCATCTACACTCAACGACAAT 239 193 1354 Antisense
GATCGCGATGACGAGGGGAGACCCA 49 417 1495 Antisense
GGGAGACCCATTAACGAGGAGGATC 596 495 1510 Antisense
CGACGTGGATACAACTGCCTCGGAA 667 249 1644 Antisense
GAAGAAGCTGCTGGACCCGAAAACC 630 339 1689 Antisense
AAACCATCCAAAGAGTGTCCGCTGA 335 125 1709 Antisense
GTGTCCGCTGATCTAGATGCATCGA 540 487 1723 Antisense
Sequence Source Affymetrix Proprietary Database