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[183864_s_at]

Description Y56A3A.4 /REP_DB=WormBase Gene ID /WP=CE22575 /TR=Q9U226 /GB=CAB60514.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_high_8_8 > 06      6grp_highest_nonorm > 82      6grp_total > 77      4grp_total > 02      6grp_highest_sub > Da      6grp_cgc > 39      6grp_high1_sub > In      6grp_cgc_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 705
1 2 3 4 range
A 298.3
(-1.9)
P 		224.1
(-2.7)
M 		201.1
(-3)
P 		747.9
(3)
P 		547
B 319.6
(-2.3)
P 		244.1
(-3)
P 		320.3
(-2.3)
P 		905.7
(3)
P 		662
C 279.3
(-3)
P 		343.8
(-1.9)
P 		362.1
(-1.6)
P 		625.8
(3)
P 		347
avr 299.1
(-2.7) 		270.7
(-3) 		294.5
(-2.7) 		759.8
(3) 		489

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 525
1 2 3 4 5 6 range
A 386.8
(1.1)
P 		246.4
(-3)
P 		350.6
(0)
P 		346.2
(-0.1)
P 		453.1
(3)
P 		393
(1.3)
P 		207
B 428.3
(1.5)
P 		320.9
(-2.7)
P 		375.3
(-0.6)
P 		354.2
(-1.4)
P 		314.4
(-3)
P 		467.8
(3)
P 		153
C 266.5
(-3)
P 		282
(-2.8)
P 		291.4
(-2.7)
P 		409.3
(-1.3)
P 		364.1
(-1.8)
P 		771.3
(3)
P 		505
avr 360.5
(-1.2) 		283.1
(-3) 		339.1
(-1.7) 		369.9
(-1) 		377.2
(-0.8) 		544
(3) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 108.6
(2.9)
P 		48.6
(-3)
M 		52.6
(-2.6)
P 		109.5
(3)
P 		61
B 101.9
(-1.1)
P 		60.3
(-3)
P 		74.2
(-2.4)
P 		193
(3)
P 		133
C 92.5
(-3)
P 		98.8
(-1.9)
P 		126.2
(3)
P 		105.5
(-0.7)
P 		34
avr 101
(-0.1) 		69.2
(-3) 		84.3
(-1.6) 		136
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 71.3
(-3)
P 		87.6
(-1.5)
P 		76.3
(-2.5)
P 		87.8
(-1.5)
P 		136.7
(3)
P 		95.7
(-0.8)
P 		65
B 149
(1.2)
P 		106.8
(-1.9)
P 		91.1
(-3)
P 		93.8
(-2.8)
P 		127.7
(-0.4)
P 		174.4
(3)
P 		83
C 98.8
(-2.2)
P 		86.1
(-2.6)
P 		74.2
(-3)
P 		82.3
(-2.7)
P 		117.8
(-1.6)
P 		258.2
(3)
P 		184
avr 106.4
(-1.4) 		93.5
(-2.2) 		80.5
(-3) 		88
(-2.5) 		127.4
(-0.1) 		176.1
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183864_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6491
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.4 NCBI
Target Description Y56A3A.4 /REP_DB=WormBase Gene ID /WP=CE22575 /TR=Q9U226 /GB=CAB60514.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067137 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-12) (taf-12) mRNA, complete cds. 11/11 None
SNAP00000035189 ENSEMBL cdna:SNAP chromosome:CEL140:III:11851383:11868779:-1 10/11 None
GENEFINDER00000035211 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11859191:11866074:-1 11/11 None
Y56A3A.4 ENSEMBL cdna:known chromosome:CEL140:III:11862283:11869155:-1 gene:Y56A3A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11862350-11869146(-) 99.41 100.0
Public Domain and Genome References
Gene Title
Gene Symbol taf-12
Ensembl Y56A3A.4
Entrez Gene 176617 Entrez gene
SwissProt Q9U226 EMBL-EBI
WormBase CE31842 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6352 transcription initiation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5669 transcription factor TFIID complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60513 Hypothetical protein Y56A3A.2 [Caenorhabditis elegans] ref|NP_499537.2| Y56A3A.2 [Caenorhabditis elegans] 0.0
blast CAE67728 Hypothetical protein CBG13303 [Caenorhabditis briggsae] 0.0
blast CAB60514 Hypothetical protein Y56A3A.4 [Caenorhabditis elegans] ref|NP_499538.2| TAF (TBP-associated transcription factor) family member (taf-12) [Caenorhabditis elegans] 1.0E-58
blast CAB60514 Hypothetical protein Y56A3A.4 [Caenorhabditis elegans] ref|NP_499538.2| TAF (TBP-associated transcription factor) family member (taf-12) [Caenorhabditis elegans] 2.0E-54
blast CAE67729 Hypothetical protein CBG13304 [Caenorhabditis briggsae] 3.0E-49
blast CAE67729 Hypothetical protein CBG13304 [Caenorhabditis briggsae] 1.0E-46
blast CAB60514 Hypothetical protein Y56A3A.4 [Caenorhabditis elegans] ref|NP_499538.2| TAF (TBP-associated transcription factor) family member (taf-12) [Caenorhabditis elegans] 9.0E-46
blast CAB60513 Hypothetical protein Y56A3A.2 [Caenorhabditis elegans] ref|NP_499537.2| Y56A3A.2 [Caenorhabditis elegans] 6.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR003228 EMBL-EBI Transcription initiation factor TFIID 4.0E-40
Pfam IPR008915 EMBL-EBI Peptidase M50 3.2E-30
Pfam IPR003228 EMBL-EBI Transcription initiation factor TFIID 4.0E-40
Pfam IPR003228 EMBL-EBI Transcription initiation factor TFIID 9.2E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000035189 4 307-329,390-412,506-528,574-596
GENEFINDER00000035211 1 350-372
Sequence
Target Sequence 
>C. ELEGANS:183864_S_AT
ccatcaccacaaatgcgtgcgggccctccaccaccacagcagcagcagcagcaacacttt
caacaaatgggtattccacaacagcagcagccccaacaattcacaccgaatgggcaatca
atgcaaatgcaacagagaccaatgcagatgggcatggctcaagggccaggaccatctgga
catttaatgggaatggtcggagggcctccgccacaacatatgatgcagcagcaaggaggt
ggtggaccaccacaatttgtgtcaaaactggatgatttgatgcaacaaatcagctcaaca
acagtactcgaagaaaatgtaaaagatgttcttgtggagtacgccgacgattttgtcagt
tctctaatcgataaagcatgcaaaatgatcaagaatcgggaggtgaagaaaattgaatca
cgggatatcgaatttattctcaagaatgtctataatatgccagtggttccacgcgctgct
tcgcacaattttgggtctcaaacggaagttattgatttatcgaaggaaaagtttgttcca
acggaagcacacaagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCACCACAAATGCGTGCGGGCC 408 271 259 Antisense
CAGCAGCAGCAACACTTTCAACAAA 660 203 301 Antisense
AAATGGGTATTCCACAACAGCAGCA 473 119 323 Antisense
TGCAGATGGGCATGGCTCAAGGGCC 175 577 401 Antisense
ATGGGAATGGTCGGAGGGCCTCCGC 37 49 445 Antisense
GCCTCCGCCACAACATATGATGCAG 680 281 462 Antisense
GATGTTCTTGTGGAGTACGCCGACG 532 407 583 Antisense
GTACGCCGACGATTTTGTCAGTTCT 659 457 597 Antisense
TAATATGCCAGTGGTTCCACGCGCT 414 635 711 Antisense
GCTGCTTCGCACAATTTTGGGTCTC 331 297 733 Antisense
GTTCCAACGGAAGCACACAAGCAAC 489 429 793 Antisense
Sequence Source Affymetrix Proprietary Database