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[183863_at]

Description ZK783.3 /REP_DB=WormBase Gene ID /WP=CE00842 /TR=Q23589 /GB=AAC24420.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 56      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 1.8
(-3)
A 		2.9
(-2.8)
A 		42.6
(3)
A 		3.6
(-2.7)
A 		41
B 12
(3)
A 		3.8
(-1.8)
A 		2
(-2.8)
A 		1.7
(-3)
A 		10
C 16.5
(3)
A 		7.2
(-3)
A 		15.4
(2.3)
A 		9
(-1.8)
A 		9
avr 10.1
(-0.9) 		4.6
(-3) 		20
(3) 		4.8
(-2.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.3
(-1)
A 		9.2
(0.9)
A 		12.5
(3)
A 		5.9
(-1.2)
A 		3.1
(-3)
A 		3.7
(-2.6)
A 		9
B 4.8
(2.2)
A 		2.6
(-1.2)
A 		5.3
(3)
A 		3.9
(0.8)
A 		1.4
(-3)
A 		1.7
(-2.5)
A 		4
C 3.3
(-2.3)
A 		5
(-1.6)
A 		16.4
(3)
A 		5.2
(-1.5)
A 		4.9
(-1.6)
A 		1.5
(-3)
A 		15
avr 4.8
(-1.4) 		5.6
(-0.8) 		11.4
(3) 		5
(-1.2) 		3.1
(-2.5) 		2.3
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.7
(-2.9)
A 		0.6
(-2.9)
A 		11.1
(3)
A 		0.5
(-3)
A 		11
B 3.8
(3)
A 		0.9
(-2.1)
A 		0.5
(-2.8)
A 		0.4
(-3)
A 		3
C 5.5
(3)
A 		2.1
(-2.1)
A 		5.4
(2.9)
A 		1.5
(-3)
A 		4
avr 3.3
(0.1) 		1.2
(-2.5) 		5.7
(3) 		0.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.2
(-2.3)
A 		3.3
(3)
A 		2.7
(1.5)
A 		1.5
(-1.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		2
B 1.7
(3)
A 		0.9
(-1.4)
A 		1.3
(0.8)
A 		1
(-0.8)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1
C 1.2
(-1.9)
A 		1.5
(-1.4)
A 		4.2
(3)
A 		1
(-2.2)
A 		1.6
(-1.2)
A 		0.5
(-3)
A 		4
avr 1.4
(-0.9) 		1.9
(0.6) 		2.7
(3) 		1.2
(-1.5) 		1
(-2.1) 		0.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6101
Sequence Type Exemplar sequence
Representative Public ID ZK783.3 NCBI
Target Description ZK783.3 /REP_DB=WormBase Gene ID /WP=CE00842 /TR=Q23589 /GB=AAC24420.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066271 NCBI Caenorhabditis elegans ZK783.3 (ZK783.3) mRNA, complete cds. 11/11 None
SNAP00000009364 ENSEMBL cdna:SNAP chromosome:CEL140:III:7646099:7647994:-1 11/11 None
GENEFINDER00000009369 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7646099:7647994:-1 11/11 None
ZK783.3 ENSEMBL cdna:known chromosome:CEL140:III:7647075:7647994:-1 gene:ZK783.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7647072-7647992(-) 90.88 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK783.3
Entrez Gene 191423 Entrez gene
SwissProt Q23589 EMBL-EBI
WormBase CE00842 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90095 Hypothetical protein C07E3.4 [Caenorhabditis elegans] ref|NP_496231.1| C07E3.4 [Caenorhabditis elegans] 1.0E-176
blast AAC02601 Hypothetical protein F57H12.5 [Caenorhabditis elegans] ref|NP_501331.1| F57H12.5 [Caenorhabditis elegans] 1.0E-172
blast AAC02601 Hypothetical protein F57H12.5 [Caenorhabditis elegans] ref|NP_501331.1| F57H12.5 [Caenorhabditis elegans] 1.0E-162
blast CAA90095 Hypothetical protein C07E3.4 [Caenorhabditis elegans] ref|NP_496231.1| C07E3.4 [Caenorhabditis elegans] 1.0E-160
blast AAP68931 Hypothetical protein ZK783.5 [Caenorhabditis elegans] ref|NP_001023034.1| ZK783.5 [Caenorhabditis elegans] 1.0E-129
blast AAC24420 Hypothetical protein ZK783.3 [Caenorhabditis elegans] ref|NP_498672.1| ZK783.3 [Caenorhabditis elegans] 6.0E-88
blast AAC02601 Hypothetical protein F57H12.5 [Caenorhabditis elegans] ref|NP_501331.1| F57H12.5 [Caenorhabditis elegans] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.2E-48
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.1E-53
Sequence
Target Sequence 
>C. ELEGANS:183863_AT
aagaggacacttcggcggaggagcaaaagtactgacgctagcaatgatcagaagaaaggg
acgaagactgttgacggcgcagaaggtccctcgaaagcttccagagtcaagacagctttc
aggaatcgtaaaaagtccaccacaggaatcaagaactcaatttcgaaagagtgcaatgca
ccaactaacaaaagtatttctcgggagtcagttcggaagacgaaaagctcatttttgagt
acagtggacacggaggaggacgcacctgcacagacgccagacacaataatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGGACACTTCGGCGGAGGAGCA 8 155 52 Antisense
GCAAAAGTACTGACGCTAGCAATGA 460 317 74 Antisense
GACTGTTGACGGCGCAGAAGGTCCC 146 373 117 Antisense
CGCAGAAGGTCCCTCGAAAGCTTCC 340 253 129 Antisense
GTCCCTCGAAAGCTTCCAGAGTCAA 189 475 137 Antisense
GTCAAGACAGCTTTCAGGAATCGTA 448 455 157 Antisense
GAATCGTAAAAAGTCCACCACAGGA 473 329 174 Antisense
GTGCAATGCACCAACTAACAAAAGT 239 481 222 Antisense
GTATTTCTCGGGAGTCAGTTCGGAA 200 447 245 Antisense
AGTGGACACGGAGGAGGACGCACCT 639 57 294 Antisense
TGCACAGACGCCAGACACAATAATG 74 577 318 Antisense
Sequence Source Affymetrix Proprietary Database