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[183862_at]

Description F02C9.2 /REP_DB=WormBase Gene ID /WP=CE19774 /TR=P91204 /GB=AAD32270.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 01      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 5.6
(-2.7)
A 		1.9
(-3)
A 		4.3
(-2.8)
A 		86.3
(3)
A 		84
B 5.6
(-2.8)
A 		4.3
(-3)
A 		17.8
(-0.5)
A 		36.3
(3)
A 		32
C 3.1
(-2.8)
A 		4.4
(-2.6)
A 		1.9
(-3)
A 		44.3
(3)
A 		42
avr 4.8
(-2.9) 		3.5
(-3) 		8
(-2.5) 		55.6
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 2.9
(-2.7)
A 		5
(-2.3)
A 		1.7
(-3)
A 		29
(3)
A 		24.3
(2)
A 		22.4
(1.5)
A 		27
B 3.4
(-2.4)
A 		1.6
(-3)
A 		18.4
(3)
A 		7.9
(-0.8)
A 		14.9
(1.8)
A 		16
(2.1)
A 		17
C 5.3
(-2.8)
A 		8.6
(-2.3)
A 		4.1
(-3)
A 		4.7
(-2.9)
A 		41.7
(2.5)
A 		44.9
(3)
A 		41
avr 3.9
(-3) 		5.1
(-2.7) 		8.1
(-1.9) 		13.9
(-0.5) 		27
(2.8) 		27.8
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2
(-2.2)
A 		0.4
(-3)
A 		1.1
(-2.7)
A 		12.6
(3)
A 		12
B 1.8
(-2.4)
A 		1.1
(-3)
A 		4.1
(-0.3)
A 		7.7
(3)
A 		7
C 1
(-2.7)
A 		1.3
(-2.4)
A 		0.6
(-3)
A 		7.5
(3)
A 		7
avr 1.6
(-2.5) 		0.9
(-3) 		1.9
(-2.3) 		9.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.5
(-2.9)
A 		1.8
(-1.8)
A 		0.4
(-3)
A 		7.3
(3)
A 		7.3
(3)
A 		5.5
(1.4)
A 		7
B 1.2
(-2.3)
A 		0.5
(-3)
A 		4.5
(1.3)
A 		2.1
(-1.3)
A 		6.1
(3)
A 		6
(2.9)
A 		6
C 1.9
(-2.6)
A 		2.6
(-2.3)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		13.5
(2.4)
A 		15
(3)
A 		14
avr 1.2
(-3) 		1.6
(-2.7) 		2
(-2.4) 		3.4
(-1.3) 		9
(3) 		8.8
(2.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15784
Sequence Type Exemplar sequence
Representative Public ID F02C9.2 NCBI
Target Description F02C9.2 /REP_DB=WormBase Gene ID /WP=CE19774 /TR=P91204 /GB=AAD32270.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071458 NCBI Caenorhabditis elegans F02C9.2 (F02C9.2) mRNA, complete cds. 11/11 None
SNAP00000040784 ENSEMBL cdna:SNAP chromosome:CEL140:V:3133840:3138917:1 9/11 None
GENEFINDER00000040788 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3128952:3137209:1 11/11 None
F02C9.2 ENSEMBL cdna:known chromosome:CEL140:V:3133532:3137209:1 gene:F02C9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3133677-3137209(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02C9.2
Entrez Gene 184074 Entrez gene
SwissProt P91204 EMBL-EBI
WormBase CE36478 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD32270 Hypothetical protein F02C9.2 [Caenorhabditis elegans] ref|NP_503859.2| F02C9.2 [Caenorhabditis elegans] 0.0
blast AAF39844 Hypothetical protein F56A4.6 [Caenorhabditis elegans] ref|NP_503670.2| F56A4.6 [Caenorhabditis elegans] 0.0
blast NP_503697 Y45G12C.11 [Caenorhabditis elegans] gb|AAF60585.2| Hypothetical protein Y45G12C.11 [Caenorhabditis elegans] 0.0
blast AAD32271 Hypothetical protein F02C9.3 [Caenorhabditis elegans] ref|NP_503858.1| F02C9.3 [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A10D_HUMAN (Q9P241) Potential phospholipid-transporting ATPase VD (EC 3.6.3.1) (ATPVD) 1.0E-156
ec A10D_HUMAN (Q9P241) Potential phospholipid-transporting ATPase VD (EC 3.6.3.1) (ATPVD) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503859.2 1 7-29
F02C9.2 1 7-29
SNAP00000040784 1 532-551
GENEFINDER00000040788 11 108-130,140-162,343-362,366-388,863-885,889-911,942-964,968-987,994-1016,1026-1048,1055-1077
Sequence
Target Sequence 
>C. ELEGANS:183862_AT
ttcacgagtgcatcatttaactggtgtcacgtgtgaagacagtccgatatggtggagtat
cgcagatgtcggaatggacgcagctaaaagagtcgtaggttatatcaataatagtactgc
cccagaaattgcggaaacatggacaaagtttgaaactggactgaagaaaaatgggtatgt
aaaaaataatctgacagtgatggatgaaatgacatcggggcttggacgaagtgtttccga
tttcttctacatcccaacatctgaaagtgagtattatgccagcctaatgagaatcttcta
caagaacaaactattcttggagatagctgtgaacaaatttctcaaatctgtgaatcacca
aacatctctctctggaaattccagttacttatggggaaacgacagaaacatctgggacac
gttttacagtagagatatggttgcaatgcacccgctgaaattgggttatctgaaaacgcc
caatgaacatcgaataaggtactgcaaaacaataattcagtcttggtcggatattatatt
cggtggatctcaggattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACGAGTGCATCATTTAACTGGT 613 683 1770 Antisense
GGTGTCACGTGTGAAGACAGTCCGA 149 499 1792 Antisense
GGTGGAGTATCGCAGATGTCGGAAT 599 499 1820 Antisense
TAGTACTGCCCCAGAAATTGCGGAA 612 633 1881 Antisense
GGGGCTTGGACGAAGTGTTTCCGAT 568 497 1986 Antisense
GAAAGTGAGTATTATGCCAGCCTAA 200 361 2032 Antisense
TCTGTGAATCACCAAACATCTCTCT 247 609 2116 Antisense
GAAACATCTGGGACACGTTTTACAG 321 355 2174 Antisense
TATGGTTGCAATGCACCCGCTGAAA 310 653 2205 Antisense
GGTTATCTGAAAACGCCCAATGAAC 635 505 2233 Antisense
TTATATTCGGTGGATCTCAGGATTT 340 679 2303 Antisense
Sequence Source Affymetrix Proprietary Database