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[183861_at]

Description W02D9.10 /REP_DB=WormBase Gene ID /WP=CE14472 /TR=Q9XVG7 /GB=CAB03466.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 69      6grp_total > 99      4grp_total > 03      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8177
1 2 3 4 range
A 1471.4
(-2.2)
P 		925.3
(-2.8)
P 		703.2
(-3)
P 		6621.6
(3)
P 		5918
B 1612.5
(-2.4)
P 		1004.2
(-2.9)
P 		839.2
(-3)
P 		8813.5
(3)
P 		7974
C 1301
(-2.4)
P 		1004.8
(-2.7)
P 		636.5
(-3)
P 		7332.5
(3)
P 		6696
avr 1461.6
(-2.4) 		978.1
(-2.8) 		726.3
(-3) 		7589.2
(3) 		6863

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2858
1 2 3 4 5 6 range
A 1316
(-2.5)
P 		1448.2
(-2.2)
P 		1082.5
(-3)
P 		1625.8
(-1.8)
P 		3591.8
(2.5)
P 		3837.8
(3)
P 		2755
B 1348.1
(-3)
P 		1568.2
(-2.4)
P 		1339.7
(-3)
P 		1853.1
(-1.7)
P 		3126.3
(1.6)
P 		3646.7
(3)
P 		2307
C 1247.3
(-2.3)
P 		1542.9
(-1.5)
P 		979.5
(-3)
P 		1633
(-1.2)
P 		3033.3
(2.5)
P 		3207.2
(3)
P 		2228
avr 1303.8
(-2.6) 		1519.8
(-2) 		1133.9
(-3) 		1704
(-1.6) 		3250.5
(2.2) 		3563.9
(3) 		2430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1694
1 2 3 4 range
A 535.7
(-0.3)
P 		200.9
(-2.9)
P 		183.8
(-3)
P 		969.3
(3)
P 		786
B 514.2
(-1.9)
P 		248
(-2.8)
P 		194.5
(-3)
P 		1878.2
(3)
P 		1684
C 430.7
(-1.8)
P 		288.9
(-2.6)
P 		221.8
(-3)
P 		1236.4
(3)
P 		1015
avr 493.5
(-1.5) 		245.9
(-2.8) 		200
(-3) 		1361.3
(3) 		1161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1124
1 2 3 4 5 6 range
A 242.6
(-3)
P 		515.1
(-1)
P 		235.7
(-3)
P 		412.4
(-1.8)
P 		1083.9
(3)
P 		934.4
(1.9)
P 		848
B 469.1
(-2.2)
P 		522
(-1.9)
P 		325.3
(-3)
P 		490.8
(-2)
P 		1270.2
(2.5)
P 		1359.8
(3)
P 		1035
C 462.3
(-1.4)
P 		470.8
(-1.4)
P 		249.3
(-3)
P 		328.4
(-2.4)
P 		981.5
(2.3)
P 		1073.6
(3)
P 		824
avr 391.3
(-2.1) 		502.6
(-1.4) 		270.1
(-3) 		410.5
(-2) 		1111.9
(2.9) 		1122.6
(3) 		853
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183861_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.958
Sequence Type Exemplar sequence
Representative Public ID W02D9.10 NCBI
Target Description W02D9.10 /REP_DB=WormBase Gene ID /WP=CE14472 /TR=Q9XVG7 /GB=CAB03466.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060779 NCBI Caenorhabditis elegans W02D9.10 (W02D9.10) mRNA, complete cds. 11/11 None
SNAP00000003935 ENSEMBL cdna:SNAP chromosome:CEL140:I:12559675:12560273:1 11/11 None
GENEFINDER00000003948 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12559675:12560273:1 11/11 None
W02D9.10 ENSEMBL cdna:known chromosome:CEL140:I:12559659:12560402:1 gene:W02D9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12559605-12560204(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D9.10
Entrez Gene 173125 Entrez gene
SwissProt Q9XVG7 EMBL-EBI
WormBase CE14472 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03466 Hypothetical protein W02D9.10 [Caenorhabditis elegans] ref|NP_493180.1| W02D9.10 [Caenorhabditis elegans] 3.0E-90
blast CAE64109 Hypothetical protein CBG08718 [Caenorhabditis briggsae] 1.0E-69
blast CAE61630 Hypothetical protein CBG05560 [Caenorhabditis briggsae] 1.0E-57
Sequence
Target Sequence 
>C. ELEGANS:183861_AT
caccaccgaatacggcaccggatgcttcgccgctccatcctcatcctgccaaagcgagta
caacccgaaggtcgaaaacgatgctgtcgcccataactctatctcggggctccgtggatc
cttgcgccggaactcttcgaacctctcaagccagcttacggctcttcaggagacttgcct
cgccgacgctgctcagatcgaaatcaactgctccacatcgaacgccaagcaggcattctt
cgtgaagatcgaggtgcccactggagagcagggtgtcctccacttctcgccttcctccgg
cgacatctctcaagtcttcactccgatccagaacggatgtggccatggagtatggaaatt
tgttgtctgcactatggagaatggaagtgaaatcgcccattcgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCACCGAATACGGCACCGGATGC 612 201 36 Antisense
ATCCTCATCCTGCCAAAGCGAGTAC 365 39 72 Antisense
TCGAAAACGATGCTGTCGCCCATAA 264 593 107 Antisense
GTCGCCCATAACTCTATCTCGGGGC 184 473 121 Antisense
TCTCAAGCCAGCTTACGGCTCTTCA 566 613 179 Antisense
TTACGGCTCTTCAGGAGACTTGCCT 484 683 191 Antisense
GCCGACGCTGCTCAGATCGAAATCA 705 283 217 Antisense
CGAACGCCAAGCAGGCATTCTTCGT 520 249 254 Antisense
GTGCCCACTGGAGAGCAGGGTGTCC 592 477 289 Antisense
AGTCTTCACTCCGATCCAGAACGGA 397 61 348 Antisense
TGGAAGTGAAATCGCCCATTCGCAA 229 547 417 Antisense
Sequence Source Affymetrix Proprietary Database