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[183860_at]

Description C53A5.13 /REP_DB=WormBase Gene ID /WP=CE24862 /TR=O62118 /GB=CAB03993.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 61      6grp_total > 40      4grp_total > 62      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 487.7
(3)
P 		311.1
(-0.9)
P 		333.2
(-0.4)
P 		214.4
(-3)
P 		273
B 521.5
(3)
P 		362.5
(0.6)
P 		377.8
(0.8)
P 		128.8
(-3)
P 		393
C 498.9
(3)
P 		374.6
(-0)
P 		366.8
(-0.2)
P 		253.1
(-3)
P 		246
avr 502.7
(3) 		349.4
(-0) 		359.3
(0.2) 		198.8
(-3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 583
1 2 3 4 5 6 range
A 390.8
(0.9)
P 		461.5
(2.3)
P 		499.8
(3)
P 		446.7
(2)
P 		254.5
(-1.7)
P 		186.9
(-3)
P 		313
B 463.6
(1.3)
P 		473.2
(1.5)
P 		576.4
(3)
P 		460
(1.3)
P 		284.6
(-1.4)
P 		175.5
(-3)
P 		401
C 364.1
(-0.6)
P 		538.4
(1.1)
P 		476.8
(0.5)
P 		718.4
(3)
P 		198.6
(-2.3)
P 		135.3
(-3)
P 		583
avr 406.2
(0.8) 		491
(2.2) 		517.7
(2.6) 		541.7
(3) 		245.9
(-1.7) 		165.9
(-3) 		376
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 177.6
(3)
P 		67.5
(-1.5)
P 		87.1
(-0.7)
P 		31.4
(-3)
P 		146
B 166.3
(3)
P 		89.5
(-0.3)
P 		87.6
(-0.4)
P 		27.4
(-3)
P 		139
C 165.1
(3)
P 		107.7
(0.2)
P 		127.9
(1.2)
P 		42.7
(-3)
P 		122
avr 169.7
(3) 		88.2
(-0.6) 		100.9
(-0) 		33.8
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 72
(-1.7)
P 		164.1
(3)
P 		108.8
(0.2)
P 		113.3
(0.4)
P 		76.8
(-1.4)
P 		45.5
(-3)
P 		119
B 161.3
(3)
P 		157.5
(2.8)
P 		140
(1.7)
P 		121.8
(0.5)
P 		115.6
(0.1)
P 		65.5
(-3)
P 		96
C 135
(1.5)
P 		164.3
(3)
P 		121.4
(0.8)
P 		144.5
(2)
P 		64.3
(-2)
P 		45.3
(-3)
P 		119
avr 122.8
(0.9) 		162
(3) 		123.4
(0.9) 		126.5
(1.1) 		85.6
(-1.2) 		52.1
(-3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13485
Sequence Type Exemplar sequence
Representative Public ID C53A5.13 NCBI
Target Description C53A5.13 /REP_DB=WormBase Gene ID /WP=CE24862 /TR=O62118 /GB=CAB03993.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074202 NCBI Caenorhabditis elegans C53A5.13 (C53A5.13) mRNA, complete cds. 11/11 None
SNAP00000009290 ENSEMBL cdna:SNAP chromosome:CEL140:V:14555721:14557044:1 10/11 None
GENEFINDER00000009295 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14552047:14557044:1 11/11 None
C53A5.13 ENSEMBL cdna:known chromosome:CEL140:V:14549510:14557129:1 gene:C53A5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14549529-14557044(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53A5.13
Entrez Gene 179961 Entrez gene
SwissProt O62118 EMBL-EBI
WormBase CE35843 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03993 Hypothetical protein C53A5.13 [Caenorhabditis elegans] ref|NP_506603.2| C53A5.13 [Caenorhabditis elegans] 0.0
blast CAE60871 Hypothetical protein CBG04582 [Caenorhabditis briggsae] 0.0
blast CAB03993 Hypothetical protein C53A5.13 [Caenorhabditis elegans] ref|NP_506603.2| C53A5.13 [Caenorhabditis elegans] 1.0E-111
blast CAE60871 Hypothetical protein CBG04582 [Caenorhabditis briggsae] 1.0E-101
blast CAE66297 Hypothetical protein CBG11546 [Caenorhabditis briggsae] 3.0E-80
blast CAE66297 Hypothetical protein CBG11546 [Caenorhabditis briggsae] 4.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.8E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.8E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506603.2 1 601-623
C53A5.13 1 601-623
SNAP00000009290 1 116-138
GENEFINDER00000009295 1 478-500
Sequence
Target Sequence 
>C. ELEGANS:183860_AT
catggtcgttgtcgatagtcgcccatatgacttggctccgattgatatcactaaattggc
cgatagaaccacctccgaagccgaccatgttccatactacattacagctgcgttgacccc
agaagaagtaaaaaatcatggagactttagaatcggcgatggcaaaatctacggtggcta
cttaaattatcctctccgaaccgaaattgatccgcgatggacgttgattccagttacaca
aagtgaaaatgaaatgattgagccgcatttgaaaacttgtggatttaatgaacaaggaac
attcaagtgtgatatgtcaatttcagaggttttcactcaaattcctattgttctcgtttc
ggctggatttttgattcttattcttgtcatatttttgatgtgtctgctggtattctgttt
tttgagaaattcatgtcaagaccgtccgggtgtgaaagagtctgctctgatgtactatcg
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGGTCGTTGTCGATAGTCGCCCA 342 209 1182 Antisense
TCGCCCATATGACTTGGCTCCGATT 600 597 1200 Antisense
ACTACATTACAGCTGCGTTGACCCC 83 101 1277 Antisense
GATGGCAAAATCTACGGTGGCTACT 227 407 1339 Antisense
GGTGGCTACTTAAATTATCCTCTCC 189 499 1354 Antisense
CTCTCCGAACCGAAATTGATCCGCG 533 231 1373 Antisense
GATCCGCGATGGACGTTGATTCCAG 243 417 1390 Antisense
CTATTGTTCTCGTTTCGGCTGGATT 667 223 1526 Antisense
TGTGTCTGCTGGTATTCTGTTTTTT 379 555 1580 Antisense
ATTCATGTCAAGACCGTCCGGGTGT 520 9 1610 Antisense
GAGTCTGCTCTGATGTACTATCGAA 340 399 1639 Antisense
Sequence Source Affymetrix Proprietary Database