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[183859_at]

Description F13H10.1 /REP_DB=WormBase Gene ID /WP=CE05622 /TR=Q19424 /GB=CAA92952.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 60      6grp_total > 12      4grp_total > 03      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 301.9
(-2.6)
P 		283.1
(-3)
P 		288.2
(-2.9)
P 		555.6
(3)
P 		273
B 331.3
(-0.2)
P 		218.7
(-3)
P 		266.9
(-1.8)
P 		462.8
(3)
P 		244
C 269
(-2.8)
P 		259.9
(-3)
P 		294.4
(-2.4)
P 		581.7
(3)
P 		322
avr 300.7
(-2) 		253.9
(-3) 		283.2
(-2.4) 		533.4
(3) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 425.9
(2.1)
P 		412.5
(1.9)
P 		467.1
(3)
P 		290.5
(-0.7)
P 		232.8
(-1.9)
P 		179.7
(-3)
P 		287
B 447.4
(0.8)
P 		587.7
(3)
P 		514
(1.8)
P 		286.9
(-1.8)
P 		295.1
(-1.6)
P 		209.7
(-3)
P 		378
C 305.9
(-1.7)
P 		660.7
(3)
P 		211.4
(-3)
P 		334.2
(-1.4)
P 		227.2
(-2.8)
P 		232.9
(-2.7)
P 		449
avr 393.1
(0.2) 		553.6
(3) 		397.5
(0.3) 		303.9
(-1.3) 		251.7
(-2.2) 		207.4
(-3) 		346
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 109.9
(3)
P 		61.5
(-3)
P 		75.3
(-1.3)
P 		81.3
(-0.5)
P 		48
B 105.6
(3)
P 		54
(-3)
P 		61.9
(-2.1)
P 		98.6
(2.2)
P 		52
C 89
(0.1)
P 		74.7
(-3)
P 		102.6
(3)
P 		98.1
(2)
P 		28
avr 101.5
(3) 		63.4
(-3) 		79.9
(-0.4) 		92.7
(1.6) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 78.5
(-1)
P 		146.7
(3)
P 		101.7
(0.4)
P 		73.7
(-1.3)
P 		70.3
(-1.5)
P 		43.7
(-3)
P 		103
B 155.7
(1)
P 		195.6
(3)
P 		124.8
(-0.6)
P 		76
(-3)
P 		119.9
(-0.8)
P 		78.2
(-2.9)
P 		120
C 113.4
(-0.6)
P 		201.6
(3)
P 		53.8
(-3)
P 		67.2
(-2.5)
P 		73.5
(-2.2)
P 		78
(-2)
P 		148
avr 115.9
(-0.4) 		181.3
(3) 		93.4
(-1.6) 		72.3
(-2.7) 		87.9
(-1.9) 		66.6
(-3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9451
Sequence Type Exemplar sequence
Representative Public ID F13H10.1 NCBI
Target Description F13H10.1 /REP_DB=WormBase Gene ID /WP=CE05622 /TR=Q19424 /GB=CAA92952.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069649 NCBI Caenorhabditis elegans F13H10.1 (F13H10.1) mRNA, complete cds. 11/11 None
SNAP00000039791 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11004555:11005014:1 11/11 None
GENEFINDER00000039804 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11002456:11005014:1 9/11 None
F13H10.1 ENSEMBL cdna:known chromosome:CEL140:IV:11004555:11005014:1 gene:F13H10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11004560-11005020(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13H10.1
Entrez Gene 184441 Entrez gene
SwissProt Q19424 EMBL-EBI
WormBase CE05622 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92952 Hypothetical protein F13H10.1 [Caenorhabditis elegans] ref|NP_502050.1| F13H10.1 [Caenorhabditis elegans] 3.0E-63
blast CAA92952 Hypothetical protein F13H10.1 [Caenorhabditis elegans] ref|NP_502050.1| F13H10.1 [Caenorhabditis elegans] 2.0E-51
blast CAE61972 Hypothetical protein CBG05975 [Caenorhabditis briggsae] 9.0E-45
blast CAE61972 Hypothetical protein CBG05975 [Caenorhabditis briggsae] 7.0E-35
blast CAE61971 Hypothetical protein CBG05972 [Caenorhabditis briggsae] 7.0E-31
Sequence
Target Sequence 
>C. ELEGANS:183859_AT
cgaacaaattcgtcttactccagcaatatggaaaaatcgagaatttgatatatctcgtga
gcatatgaatgaaatttgggctcatttcgggcacacttttgatatttctccaaaggaagc
tgaaatgcaatgggaatatctcattcggcttcatcgatttatgaatagaaatgcaagttt
agagcaatttcgaattgaagttccttccctagaagatgattttacaccggcagatactct
tgttgctgaatcacttgctattttcttgaaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAACAAATTCGTCTTACTCCAGCA 207 253 45 Antisense
AATTCGTCTTACTCCAGCAATATGG 260 173 51 Antisense
GAATTTGATATATCTCGTGAGCATA 544 325 85 Antisense
GCTCATTTCGGGCACACTTTTGATA 362 299 124 Antisense
GGGCACACTTTTGATATTTCTCCAA 576 493 133 Antisense
GAATATCTCATTCGGCTTCATCGAT 61 327 178 Antisense
TTCGAATTGAAGTTCCTTCCCTAGA 225 685 233 Antisense
GATGATTTTACACCGGCAGATACTC 102 411 259 Antisense
ACACCGGCAGATACTCTTGTTGCTG 519 109 268 Antisense
TACTCTTGTTGCTGAATCACTTGCT 186 647 279 Antisense
ATCACTTGCTATTTTCTTGAAACCA 514 27 294 Antisense
Sequence Source Affymetrix Proprietary Database