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[183858_at]

Description ZK355.1 /REP_DB=WormBase Gene ID /WP=CE24722 /TR=Q9N4N8 /GB=AAF39998.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 05      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 5.2
(-3)
A 		15.5
(0.1)
A 		10.1
(-1.5)
A 		25.1
(3)
A 		20
B 3.9
(2.4)
A 		4.1
(3)
A 		2
(-3)
A 		3.1
(0.1)
A 		2
C 23.7
(3)
A 		1.1
(-3)
A 		7.7
(-1.2)
A 		22.4
(2.7)
A 		23
avr 10.9
(-0.5) 		6.9
(-2.8) 		6.6
(-3) 		16.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 16.2
(3)
A 		9.4
(-0.2)
A 		12.2
(1.1)
A 		13.1
(1.6)
A 		3.3
(-3)
A 		6.4
(-1.6)
A 		13
B 27.3
(2.8)
A 		6.1
(-1.9)
A 		3.4
(-2.5)
A 		28.2
(3)
A 		1
(-3)
A 		4.2
(-2.3)
A 		27
C 17.3
(3)
A 		11.8
(0.9)
A 		1.6
(-3)
A 		4.9
(-1.7)
A 		2.6
(-2.6)
A 		2.2
(-2.8)
A 		16
avr 20.3
(3) 		9.1
(-0.7) 		5.7
(-1.9) 		15.4
(1.4) 		2.3
(-3) 		4.3
(-2.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.9
(-3)
A 		3.4
(2)
A 		2.7
(-0.3)
A 		3.7
(3)
A 		2
B 1.2
(3)
A 		1
(1.3)
A 		0.5
(-3)
A 		0.7
(-1.3)
A 		1
C 7.8
(3)
A 		0.3
(-3)
A 		2.7
(-1.1)
A 		3.8
(-0.2)
A 		8
avr 3.6
(3) 		1.6
(-3) 		2
(-1.8) 		2.7
(0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3
(2.2)
A 		3.3
(3)
A 		2.7
(1.4)
A 		3.3
(3)
A 		1
(-3)
A 		1.6
(-1.4)
A 		2
B 9.5
(3)
A 		2
(-1.9)
A 		0.8
(-2.7)
A 		7.5
(1.7)
A 		0.4
(-3)
A 		1.6
(-2.2)
A 		9
C 6.4
(3)
A 		3.6
(0.2)
A 		0.4
(-3)
A 		1
(-2.4)
A 		0.8
(-2.6)
A 		0.7
(-2.7)
A 		6
avr 6.3
(3) 		3
(-0.5) 		1.3
(-2.4) 		3.9
(0.4) 		0.7
(-3) 		1.3
(-2.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5282
Sequence Type Exemplar sequence
Representative Public ID ZK355.1 NCBI
Target Description ZK355.1 /REP_DB=WormBase Gene ID /WP=CE24722 /TR=Q9N4N8 /GB=AAF39998.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062002(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062002 NCBI Caenorhabditis elegans ZK355.1 (ZK355.1) mRNA, complete cds. 11/11 None
ZK355.1 ENSEMBL cdna:known chromosome:CEL140:II:2930724:2933459:1 gene:ZK355.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021474 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021479 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2930722-2933458(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK355.1
Entrez Gene 191297 Entrez gene
SwissProt Q9N4N8 EMBL-EBI
WormBase CE24722 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39998 Hypothetical protein ZK355.1 [Caenorhabditis elegans] ref|NP_494403.1| ZK355.1 [Caenorhabditis elegans] 0.0
blast AAB66213 Hypothetical protein F45C12.16 [Caenorhabditis elegans] ref|NP_494063.1| F45C12.16 [Caenorhabditis elegans] 4.0E-91
blast CAA90668 Hypothetical protein T05A6.4 [Caenorhabditis elegans] ref|NP_495643.1| T05A6.4 [Caenorhabditis elegans] 6.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.9E-16
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.5E-11
Sequence
Target Sequence 
>C. ELEGANS:183858_AT
ggaggatcttctggaaggcccattcattattaacttggaaaacttgcacccagacttttg
tctgacttttgaggaatttctattctttttgtacaacaatatatccttcaaaaaccttga
cgcaacctattgcgataacgagacccaaatctatggggaaccgatttgtgaattcaaaac
catgagggatctgaaatatggatgcagttatattattggaaatgtgatgattggtccggg
cgatgaagaattcgtatataaattgaaggaacttgaagttttattcgggagcttgacgat
acgaaatactacactgaaaaatgcaaactttctattttatttgagtttcattgtgcattt
ggaagaagatcatgtgatgcaaattatgttaaatcagaatttagaagatttcgaaaattt
tttcgttcagaatattattacaaaacacacttcccggactgcagtagttcacaaaaatcc
aaaactcgttgctaaaaaacgatttatatatccgatcagttatcaaactaatttagcgct
tcttggtgactttttcgaaagctcaacaacaaggtcgtatgctacaacttgtgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGATCTTCTGGAAGGCCCATTC 114 517 927 Antisense
GGAAGGCCCATTCATTATTAACTTG 251 531 939 Antisense
GCACCCAGACTTTTGTCTGACTTTT 134 315 972 Antisense
GAATTTCTATTCTTTTTGTACAACA 669 325 1000 Antisense
CAAAAACCTTGACGCAACCTATTGC 153 189 1035 Antisense
GCAACCTATTGCGATAACGAGACCC 85 321 1048 Antisense
ATGTGATGATTGGTCCGGGCGATGA 566 49 1148 Antisense
TATTATTACAAAACACACTTCCCGG 36 661 1359 Antisense
CTTCCCGGACTGCAGTAGTTCACAA 399 217 1376 Antisense
TTTAGCGCTTCTTGGTGACTTTTTC 66 675 1458 Antisense
AAGGTCGTATGCTACAACTTGTGTG 40 159 1497 Antisense
Sequence Source Affymetrix Proprietary Database