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[183856_at]

Description Y68A4B.3 /REP_DB=WormBase Gene ID /WP=CE19263 /TR=Q9XXB6 /GB=CAA19556.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 0.6
(-3)
A 		3.3
(-2.2)
A 		1.2
(-2.8)
A 		20.1
(3)
A 		20
B 0.9
(3)
A 		0.8
(1)
A 		0.8
(1)
A 		0.6
(-3)
A 		0
C 2.4
(3)
A 		1.2
(-1.2)
A 		0.7
(-3)
A 		1.2
(-1.2)
A 		2
avr 1.3
(-2.6) 		1.8
(-2.2) 		0.9
(-3) 		7.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2
(-2.5)
A 		0.7
(-3)
A 		17.2
(3)
A 		2.1
(-2.5)
A 		2
(-2.5)
A 		0.6
(-3)
A 		17
B 0.7
(-1.3)
A 		0.5
(-3)
A 		1.2
(3)
A 		0.7
(-1.3)
A 		0.6
(-2.1)
A 		0.9
(0.4)
A 		1
C 1.5
(-1.8)
A 		2.3
(1.4)
A 		1.2
(-3)
A 		2.7
(3)
A 		1.5
(-1.8)
A 		1.4
(-2.2)
A 		2
avr 1.4
(-2.6) 		1.2
(-2.8) 		6.5
(3) 		1.8
(-2.1) 		1.4
(-2.6) 		1
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.2
(-3)
A 		0.7
(-1.9)
A 		0.3
(-2.8)
A 		2.9
(3)
A 		3
B 0.3
(3)
A 		0.2
(0)
A 		0.2
(0)
A 		0.1
(-3)
A 		0
C 0.8
(3)
A 		0.3
(-2)
A 		0.2
(-3)
A 		0.2
(-3)
A 		1
avr 0.4
(-1.7) 		0.4
(-1.7) 		0.2
(-3) 		1.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-2.7)
A 		0.3
(-2.8)
A 		3.8
(3)
A 		0.5
(-2.5)
A 		0.6
(-2.3)
A 		0.2
(-3)
A 		4
B 0.2
(-3)
A 		0.2
(-3)
A 		0.3
(3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.3
(3)
A 		0
C 0.6
(1.5)
A 		0.7
(3)
A 		0.3
(-3)
A 		0.5
(0)
A 		0.5
(0)
A 		0.5
(0)
A 		0
avr 0.4
(-2.5) 		0.4
(-2.5) 		1.5
(3) 		0.4
(-2.5) 		0.4
(-2.5) 		0.3
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13976
Sequence Type Exemplar sequence
Representative Public ID Y68A4B.3 NCBI
Target Description Y68A4B.3 /REP_DB=WormBase Gene ID /WP=CE19263 /TR=Q9XXB6 /GB=CAA19556.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074967 NCBI Caenorhabditis elegans Y68A4B.3 (Y68A4B.3) mRNA, complete cds. 11/11 None
GENEFINDER00000008404 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17244285:17245223:-1 11/11 None
Y68A4B.3 ENSEMBL cdna:known chromosome:CEL140:V:17244285:17244640:-1 gene:Y68A4B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008401 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17244284-17244640(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y68A4B.3
Entrez Gene 190532 Entrez gene
SwissProt Q9XXB6 EMBL-EBI
WormBase CE19263 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19556 Hypothetical protein Y68A4B.3 [Caenorhabditis elegans] ref|NP_507368.1| Y68A4B.3 [Caenorhabditis elegans] 1.0E-45
blast CAA19556 Hypothetical protein Y68A4B.3 [Caenorhabditis elegans] ref|NP_507368.1| Y68A4B.3 [Caenorhabditis elegans] 3.0E-45
blast CAA20968 Hypothetical protein Y102A5C.27 [Caenorhabditis elegans] ref|NP_507298.1| Y102A5C.27 [Caenorhabditis elegans] 4.0E-15
Sequence
Target Sequence 
>C. ELEGANS:183856_AT
aaggatgctggacaaggatggatgtccaactgtagaaattacgtgtacaaaacaggtggt
cggcacttgtaaattcagtttcatcgctgtaaacgcagatggtgagacacctgtcaaggg
agcacaaactgttgctaacactgttggatatagtgtgacgtgcaggaaggatggtacctt
ttcaatgaaagatgataataaaaacaacatattcggcttgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGATGCTGGACAAGGATGGATGT 65 161 18 Antisense
GATGGATGTCCAACTGTAGAAATTA 547 407 34 Antisense
CAAAACAGGTGGTCGGCACTTGTAA 172 191 65 Antisense
GCACTTGTAAATTCAGTTTCATCGC 275 317 80 Antisense
CAGTTTCATCGCTGTAAACGCAGAT 654 205 93 Antisense
AACGCAGATGGTGAGACACCTGTCA 429 143 109 Antisense
GACACCTGTCAAGGGAGCACAAACT 13 367 123 Antisense
GCACAAACTGTTGCTAACACTGTTG 332 317 139 Antisense
GTTGGATATAGTGTGACGTGCAGGA 286 435 160 Antisense
GTGCAGGAAGGATGGTACCTTTTCA 613 405 177 Antisense
TAAAAACAACATATTCGGCTTGACT 71 637 216 Antisense
Sequence Source Affymetrix Proprietary Database