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[183855_at]

Description Y70C5C.4 /REP_DB=WormBase Gene ID /WP=CE16676 /TR=O62500 /GB=CAB16538.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 0      6grp_cgc > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 48.9
(0.9)
A 		10.6
(-3)
A 		58.3
(1.9)
A 		69.5
(3)
A 		59
B 38.5
(3)
A 		11.7
(-3)
A 		37.1
(2.7)
A 		33.2
(1.8)
A 		27
C 50.1
(-2.2)
A 		61.7
(-1.4)
A 		38.9
(-3)
A 		126
(3)
A 		87
avr 45.8
(-0.8) 		28
(-3) 		44.8
(-0.9) 		76.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 70.6
(3)
A 		34.6
(-0.4)
A 		50.9
(1.1)
A 		35.7
(-0.3)
A 		28.3
(-1)
A 		6.9
(-3)
A 		64
B 59.6
(3)
A 		58.6
(2.9)
A 		4.9
(-3)
A 		27
(-0.6)
A 		27.2
(-0.6)
A 		29.4
(-0.3)
A 		55
C 38.9
(0.1)
A 		47.7
(1.3)
A 		34.8
(-0.4)
A 		16.1
(-3)
A 		60
(3)
A 		38.8
(0.1)
A 		44
avr 56.4
(3) 		47
(1.2) 		30.2
(-2) 		26.3
(-2.8) 		38.5
(-0.4) 		25
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 17.8
(3)
A 		2.3
(-3)
A 		15.2
(2)
A 		10.2
(0.1)
A 		16
B 12.3
(3)
A 		2.9
(-3)
A 		8.6
(0.6)
A 		7.1
(-0.3)
A 		9
C 16.6
(-0.6)
A 		17.7
(0.2)
A 		13.6
(-3)
A 		21.2
(3)
A 		8
avr 15.6
(3) 		7.6
(-3) 		12.5
(0.7) 		12.8
(0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13
(3)
A 		12.3
(2.6)
A 		11.1
(2)
A 		9.1
(0.9)
A 		8.6
(0.7)
A 		1.7
(-3)
A 		11
B 20.7
(3)
A 		19.5
(2.6)
A 		1.2
(-3)
A 		7.2
(-1.2)
A 		11.1
(0)
A 		11
(0)
A 		20
C 14.4
(1.1)
A 		14.5
(1.2)
A 		8.9
(-0.9)
A 		3.2
(-3)
A 		19.4
(3)
A 		13
(0.6)
A 		16
avr 16
(3) 		15.4
(2.6) 		7.1
(-2.6) 		6.5
(-3) 		13
(1.1) 		8.6
(-1.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13092
Sequence Type Exemplar sequence
Representative Public ID Y70C5C.4 NCBI
Target Description Y70C5C.4 /REP_DB=WormBase Gene ID /WP=CE16676 /TR=O62500 /GB=CAB16538.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074828 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-137) (srh-137) mRNA, complete cds. 11/11 None
Y70C5C.4 ENSEMBL cdna:known chromosome:CEL140:V:16718061:16719255:-1 gene:Y70C5C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16718060-16719255(-) 97.87 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-137
Ensembl Y70C5C.4
Entrez Gene 190569 Entrez gene
SwissProt O62500 EMBL-EBI
WormBase CE16676 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16538 Hypothetical protein Y70C5C.4 [Caenorhabditis elegans] ref|NP_507229.1| Serpentine Receptor, class H family member (srh-137) [Caenorhabditis elegans] 1.0E-148
blast CAE11318 Hypothetical protein T08G3.12 [Caenorhabditis elegans] ref|NP_001024122.1| Serpentine Receptor, class H family member (srh-138) [Caenorhabditis elegans] 3.0E-70
blast CAA16167 Hypothetical protein F57E7.3 [Caenorhabditis elegans] ref|NP_507171.1| Serpentine Receptor, class H family member (srh-139) [Caenorhabditis elegans] 6.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507229.1 7 20-39,52-74,94-116,137-159,200-222,242-264,274-296
Y70C5C.4 7 20-39,52-74,94-116,137-159,200-222,242-264,274-296
Sequence
Target Sequence 
>C. ELEGANS:183855_AT
actactccgccgggatgctgatactcaaagtagatttatcaaacgaattgtttattttgc
aatcaactacaccgttgcatttatcgacatgctacctatcatattaaacgccgacaattc
aaagaattcaagagaaaaagtcgaaagtacatttccctgcatcccagcaagtatagtcta
tagtccagatttatatttactaaccgagaatcggatgacaacggcgctcctattgctagg
ttacatggcatttacgtcttgtcaaatattatttttcttcaccagtactttactttattt
attcaacactaaatcaatgtcaccaaagacttccaaaatgcagaaacaactattcaaagc
attatgtgttcaagtgaccgtaccttttgttgttgtacttgtaccatgtttttatctgaa
tgtctcctcggctctagaacattttgatatgatattcatcaatatcgctttgcttattct
tcaatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACTCCGCCGGGATGCTGATACT 458 101 378 Antisense
ACTACACCGTTGCATTTATCGACAT 367 101 443 Antisense
GTCGAAAGTACATTTCCCTGCATCC 169 475 517 Antisense
TTTCCCTGCATCCCAGCAAGTATAG 626 669 529 Antisense
AGAATCGGATGACAACGGCGCTCCT 123 75 584 Antisense
GGCGCTCCTATTGCTAGGTTACATG 202 541 600 Antisense
GGTTACATGGCATTTACGTCTTGTC 341 507 616 Antisense
ATATTATTTTTCTTCACCAGTACTT 364 19 643 Antisense
GTGTTCAAGTGACCGTACCTTTTGT 361 485 743 Antisense
TTTTTATCTGAATGTCTCCTCGGCT 177 675 786 Antisense
ATCGCTTTGCTTATTCTTCAATGTC 574 37 841 Antisense
Sequence Source Affymetrix Proprietary Database