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[183854_s_at]

Description T07A9.1 /REP_DB=WormBase Gene ID /WP=CE17210 /TR=O44415 /GB=AAK39287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 63      6grp_total > 85      4grp_total > 10      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1066
1 2 3 4 range
A 613.9
(-2.4)
P 		546.9
(-3)
P 		569.7
(-2.8)
P 		1223.9
(3)
P 		677
B 435.4
(-3)
P 		620
(-1.7)
P 		500.5
(-2.5)
P 		1283.7
(3)
P 		848
C 517
(-2.7)
P 		506.9
(-2.7)
P 		459.2
(-3)
P 		1501.1
(3)
P 		1042
avr 522.1
(-2.9) 		557.9
(-2.7) 		509.8
(-3) 		1336.2
(3) 		826

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 413.4
(-2.8)
P 		595.7
(1.5)
P 		404
(-3)
P 		599.5
(1.5)
P 		641.5
(2.5)
P 		662.1
(3)
P 		258
B 444.2
(-3)
P 		526.1
(-1.6)
P 		624.3
(0.1)
P 		796.8
(3)
P 		657.4
(0.6)
P 		684.7
(1.1)
P 		353
C 650.5
(0.1)
P 		485.5
(-3)
P 		509.9
(-2.5)
P 		806.6
(3)
P 		616.6
(-0.6)
P 		663.1
(0.3)
P 		321
avr 502.7
(-3) 		535.8
(-2.1) 		512.7
(-2.7) 		734.3
(3) 		638.5
(0.5) 		670
(1.3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 223.5
(3)
P 		118.7
(-3)
P 		148.9
(-1.3)
P 		179.2
(0.5)
P 		105
B 138.8
(-2.1)
P 		153.1
(-1.6)
P 		116
(-3)
P 		273.6
(3)
P 		158
C 171.1
(-1.6)
P 		145.7
(-3)
P 		160
(-2.2)
P 		253.1
(3)
P 		107
avr 177.8
(-0.6) 		139.2
(-3) 		141.6
(-2.9) 		235.3
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 76.2
(-3)
P 		211.8
(3)
P 		88
(-2.5)
P 		152
(0.4)
P 		193.6
(2.2)
P 		161.2
(0.8)
P 		136
B 154.6
(-2.8)
P 		175.1
(-1.8)
P 		151.6
(-3)
P 		211
(0.1)
P 		267.1
(3)
P 		255.3
(2.4)
P 		116
C 241.1
(3)
P 		148.1
(-2)
P 		129.8
(-3)
P 		162.2
(-1.3)
P 		199.5
(0.8)
P 		222
(2)
P 		111
avr 157.3
(-0.9) 		178.3
(0.4) 		123.1
(-3) 		175.1
(0.2) 		220.1
(3) 		212.8
(2.5) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183854_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11032
Sequence Type Exemplar sequence
Representative Public ID T07A9.1 NCBI
Target Description T07A9.1 /REP_DB=WormBase Gene ID /WP=CE17210 /TR=O44415 /GB=AAK39287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067489(11), NM_067513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067489 NCBI Caenorhabditis elegans T21D12.3 (T21D12.3) mRNA, complete cds. 11/11 A 
NM_067513 NCBI Caenorhabditis elegans T07A9.1 (T07A9.1) mRNA, complete cds. 11/11 A 
SNAP00000017754 ENSEMBL cdna:SNAP chromosome:CEL140:IV:383701:384997:-1 11/11 None
GENEFINDER00000017778 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:383701:384997:-1 11/11 None
SNAP00000019185 ENSEMBL cdna:SNAP chromosome:CEL140:IV:260200:264224:-1 11/11 None
GENEFINDER00000019203 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:260056:264224:-1 11/11 None
T21D12.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:259984:261685:-1 gene:T21D12.3 11/11 None
T21D12.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:259989:261683:-1 gene:T21D12.3 11/11 None
T07A9.1 ENSEMBL cdna:known chromosome:CEL140:IV:383701:384936:-1 gene:T07A9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:383700-384936(-) 100.0 100.0
chrIV:260190-261531(-) 89.17 91.37
Public Domain and Genome References
Gene Title

Ensembl T21D12.3
T07A9.1
Entrez Gene 176847 Entrez gene
188208 Entrez gene
SwissProt O44415 EMBL-EBI
O16786 EMBL-EBI
WormBase CE17210 Wormbase
CE31622 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15090_AT WW domain-containing protein at
ATH1-121501:267068_AT WW domain-containing protein at
ATH1-121501:267067_AT WW domain-containing protein at
CANINE:1584979_AT similar to polyglutamine binding protein 1 isoform d cfa
CANINE_2:CFA.11739.1.A1_S_AT similar to polyglutamine binding protein 1 isoform d cfa
CANINE_2:CFAAFFX.24012.1.S1_S_AT similar to polyglutamine binding protein 1 isoform d cfa
HG-U133_PLUS_2:207769_S_AT polyglutamine binding protein 1 hs
HG-U133A:207769_S_AT polyglutamine binding protein 1 hs
HG-FOCUS:207769_S_AT polyglutamine binding protein 1 hs
HG-U133A_2:207769_S_AT polyglutamine binding protein 1 hs
HG-U133_PLUS_2:210499_S_AT polyglutamine binding protein 1 hs
HG-U133A:210499_S_AT polyglutamine binding protein 1 hs
HG-U133A_2:210499_S_AT polyglutamine binding protein 1 hs
HG-U133_PLUS_2:214527_S_AT polyglutamine binding protein 1 hs
HG-U133A_2:214527_S_AT polyglutamine binding protein 1 hs
HG-U133A:214527_S_AT polyglutamine binding protein 1 hs
HU35KSUBA:RC_AA179787_AT polyglutamine binding protein 1 hs
U133_X3P:G10801589_3P_X_AT polyglutamine binding protein 1 hs
U133_X3P:G10801589_3P_AT polyglutamine binding protein 1 hs
U133_X3P:G10801589_3P_A_AT polyglutamine binding protein 1 hs
U133_X3P:HS.30570.4.S1_3P_X_AT polyglutamine binding protein 1 hs
U133_X3P:HS.30570.4.S1_3P_A_AT polyglutamine binding protein 1 hs
U133_X3P:210499_3P_S_AT polyglutamine binding protein 1 hs
HG-U95AV2:34325_AT polyglutamine binding protein 1 hs
MU11KSUBA:AA231619_S_AT polyglutamine binding protein 1 mm
MG-U74AV2:93010_AT polyglutamine binding protein 1 mm
MOE430A:1456086_X_AT polyglutamine binding protein 1 mm
MOUSE430A_2:1456086_X_AT polyglutamine binding protein 1 mm
MOUSE430_2:1456086_X_AT polyglutamine binding protein 1 mm
MOE430A:1417731_AT polyglutamine binding protein 1 mm
MOUSE430A_2:1417731_AT polyglutamine binding protein 1 mm
MOUSE430_2:1417731_AT polyglutamine binding protein 1 mm
MG-U74CV2:140192_AT Polyglutamine binding protein 1, mRNA (cDNA clone MGC:6586 IMAGE:3484619) mm
RG-U34B:RC_AA964301_AT similar to Polyglutamine binding protein 1 rn
RG-U34B:RC_AA998881_F_AT similar to Polyglutamine binding protein 1 rn
RAE230A:1372797_AT similar to Polyglutamine binding protein 1 rn
RAT230_2:1372797_AT similar to Polyglutamine binding protein 1 rn
Protein Similarities
Method ID Description E-Value
blast AAC48090 Paralysed arrest at two-fold protein 6 [Caenorhabditis elegans] ref|NP_499891.1| Paralysed Arrest at Two-fold family member (pat-6) [Caenorhabditis elegans] sp|O16785|PARV_CAEEL Paralyzed arrest at two-fold protein 6 (Actopaxin homolog) (Parvin-like protein) 0.0
blast AAC48091 Hypothetical protein T21D12.3 [Caenorhabditis elegans] ref|NP_499890.2| T21D12.3 [Caenorhabditis elegans] 1.0E-169
blast AAC48091 Hypothetical protein T21D12.3 [Caenorhabditis elegans] ref|NP_499890.2| T21D12.3 [Caenorhabditis elegans] 1.0E-168
blast AAC48091 Hypothetical protein T21D12.3 [Caenorhabditis elegans] ref|NP_499890.2| T21D12.3 [Caenorhabditis elegans] 1.0E-165
blast CAE74731 Hypothetical protein CBG22549 [Caenorhabditis briggsae] 1.0E-164
blast CAE65556 Hypothetical protein CBG10545 [Caenorhabditis briggsae] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.5E-6
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.5E-6
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.5E-8
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 4.3E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019203 1 680-702
Sequence
Target Sequence 
>C. ELEGANS:183854_S_AT
atcgccagagagcatgctacagtgcttttcggagattctcacgcatctgaggagaacaat
gccgctcgccgcagaaatttccacaacaagaaaacttcacgcggagggaatgatgataag
caatcacgtggcaataatgctgaaaagcggaagcgacgtgatccgatgacgtcacagggt
ccagattcagatgaagacgagttacaggaaatgacaaataaggatcgactgaaaagagca
aaaaggaaaggaattgatccaatggatccaggagctcatggaggcgctccagttgaaaaa
tggtcggatggccttcgcgttgatcacgtaacaggagccgacgtgactgctggtggacca
cttttccaacaaagaccctatcctgctccgggagcaattctcagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCCAGAGAGCATGCTACAGTGC 533 37 139 Antisense
TCCACAACAAGAAAACTTCACGCGG 190 587 218 Antisense
GATAAGCAATCACGTGGCAATAATG 375 423 253 Antisense
GCGGAAGCGACGTGATCCGATGACG 46 295 285 Antisense
CGATGACGTCACAGGGTCCAGATTC 360 245 302 Antisense
GTCACAGGGTCCAGATTCAGATGAA 332 465 309 Antisense
GTGACTGCTGGTGGACCACTTTTCC 312 483 481 Antisense
CTGCTGGTGGACCACTTTTCCAACA 481 237 485 Antisense
CTTTTCCAACAAAGACCCTATCCTG 119 221 499 Antisense
ACCCTATCCTGCTCCGGGAGCAATT 427 89 513 Antisense
CTGCTCCGGGAGCAATTCTCAGAAA 188 237 521 Antisense
Sequence Source Affymetrix Proprietary Database