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[183853_at]

Description T07A9.1 /REP_DB=WormBase Gene ID /WP=CE17210 /TR=O44415 /GB=AAK39287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 72.6
(0.7)
P 		96.7
(3)
A 		33.7
(-3)
A 		74.1
(0.8)
A 		63
B 79.1
(3)
P 		48.3
(-3)
A 		64.6
(0.2)
A 		58
(-1.1)
P 		31
C 73.1
(-0.4)
P 		71.4
(-0.6)
A 		37
(-3)
A 		121.3
(3)
M 		84
avr 74.9
(1.5) 		72.1
(1.1) 		45.1
(-3) 		84.5
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 59.9
(-1.1)
A 		46.1
(-3)
A 		78.8
(1.5)
M 		66
(-0.3)
P 		72.1
(0.6)
P 		89.6
(3)
M 		44
B 43.4
(-3)
P 		68.8
(3)
A 		65.9
(2.3)
A 		68.6
(3)
P 		68.4
(2.9)
P 		61.7
(1.3)
A 		25
C 50.4
(-3)
P 		75.1
(0.2)
A 		79.6
(0.7)
A 		97.3
(3)
A 		79.8
(0.8)
A 		78.4
(0.6)
A 		47
avr 51.2
(-3) 		63.3
(-0.2) 		74.8
(2.4) 		77.3
(3) 		73.4
(2.1) 		76.6
(2.8) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 26.4
(3)
P 		21
(1.2)
A 		8.8
(-3)
A 		10.8
(-2.3)
A 		18
B 25.2
(3)
P 		11.9
(-3)
A 		15
(-1.6)
A 		12.4
(-2.8)
P 		13
C 24.2
(3)
P 		20.5
(1)
A 		12.9
(-3)
A 		20.5
(1)
M 		11
avr 25.3
(3) 		17.8
(-0.4) 		12.2
(-3) 		14.6
(-1.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11
(-3)
A 		16.4
(-0)
A 		17.2
(0.4)
M 		16.7
(0.2)
P 		21.8
(3)
P 		21.8
(3)
M 		11
B 15.1
(-3)
P 		22.9
(0.7)
A 		16
(-2.6)
A 		18.2
(-1.5)
P 		27.8
(3)
P 		23
(0.7)
A 		13
C 18.7
(-3)
P 		22.9
(0.4)
A 		20.3
(-1.7)
A 		19.6
(-2.3)
A 		25.8
(2.7)
A 		26.2
(3)
A 		8
avr 14.9
(-3) 		20.7
(0.4) 		17.8
(-1.3) 		18.2
(-1.1) 		25.1
(3) 		23.7
(2.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11032
Sequence Type Exemplar sequence
Representative Public ID T07A9.1 NCBI
Target Description T07A9.1 /REP_DB=WormBase Gene ID /WP=CE17210 /TR=O44415 /GB=AAK39287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067513 NCBI Caenorhabditis elegans T07A9.1 (T07A9.1) mRNA, complete cds. 11/11 A 
SNAP00000017754 ENSEMBL cdna:SNAP chromosome:CEL140:IV:383701:384997:-1 10/11 None
GENEFINDER00000017778 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:383701:384997:-1 10/11 None
T07A9.1 ENSEMBL cdna:known chromosome:CEL140:IV:383701:384936:-1 gene:T07A9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:383700-384936(-) 100.0 100.0
chrIV:260190-261531(-) 89.17 91.37
Public Domain and Genome References
Gene Title
Ensembl T07A9.1
Entrez Gene 188208 Entrez gene
SwissProt O44415 EMBL-EBI
WormBase CE17210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39287 Hypothetical protein T07A9.1 [Caenorhabditis elegans] ref|NP_499914.1| T07A9.1 [Caenorhabditis elegans] 1.0E-113
blast AAC48091 Hypothetical protein T21D12.3 [Caenorhabditis elegans] ref|NP_499890.2| T21D12.3 [Caenorhabditis elegans] 1.0E-101
blast AAK39287 Hypothetical protein T07A9.1 [Caenorhabditis elegans] ref|NP_499914.1| T07A9.1 [Caenorhabditis elegans] 1.0E-100
blast AAC48091 Hypothetical protein T21D12.3 [Caenorhabditis elegans] ref|NP_499890.2| T21D12.3 [Caenorhabditis elegans] 5.0E-90
blast CAE65556 Hypothetical protein CBG10545 [Caenorhabditis briggsae] 3.0E-73
Sequence
Target Sequence 
>C. ELEGANS:183853_AT
tggaatcgatatcacgttcgcctcgaatttttctattgtcattgggtcgatggaactccg
gaatatcggtttgttggtattctccgcgtcatccacgagctataattagtgatccagctc
ctcgaatcgccagagagcatgctacagtgcttttcggagattctcacgcatctgaggaga
acaatgccgctcgccgcagaaatttccacaacaagaaaacttcacgcggagggaatgatg
ataagcaatcacgtggcaataatgctgaaaagcggaagcgacgtgatccgatgacgtcac
agggtccagattcagatgaagacgagttacaggaaatgacaaataaggatcgactgaaaa
gagcaaaaaggaaaggaattgatccaatggatccaggagctcatggaggcgctccagttg
aaaaatggtcggatggccttcgcgttgatcacgtaacaggagccgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATCGATATCACGTTCGCCTCG 184 547 14 Antisense
GTTCGCCTCGAATTTTTCTATTGTC 453 441 29 Antisense
TATTGTCATTGGGTCGATGGAACTC 303 665 47 Antisense
TCGGTTTGTTGGTATTCTCCGCGTC 398 605 79 Antisense
AGCTATAATTAGTGATCCAGCTCCT 90 77 111 Antisense
TCTGAGGAGAACAATGCCGCTCGCC 594 607 184 Antisense
ATCCAATGGATCCAGGAGCTCATGG 83 41 395 Antisense
GAGCTCATGGAGGCGCTCCAGTTGA 552 387 410 Antisense
GGCGCTCCAGTTGAAAAATGGTCGG 408 525 421 Antisense
TGGCCTTCGCGTTGATCACGTAACA 6 545 447 Antisense
GTTGATCACGTAACAGGAGCCGACG 709 437 457 Antisense
Sequence Source Affymetrix Proprietary Database