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[183852_s_at]

Description Y48E1B.5 /REP_DB=WormBase Gene ID /WP=CE14860 /TR=O18199 /GB=CAB07691.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 60      6grp_total > 17      4grp_total > 01      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1082
1 2 3 4 range
A 653.1
(-1.5)
P 		441.9
(-3)
P 		540.4
(-2.3)
P 		1273.3
(3)
P 		831
B 639.4
(-1.8)
P 		462.5
(-3)
P 		662.7
(-1.6)
P 		1346.4
(3)
P 		884
C 628.2
(-2)
P 		443.8
(-3)
P 		618.2
(-2)
P 		1524.2
(3)
P 		1080
avr 640.2
(-1.8) 		449.4
(-3) 		607.1
(-2) 		1381.3
(3) 		932

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 444
1 2 3 4 5 6 range
A 558.8
(3)
P 		380.4
(-0.2)
P 		405.4
(0.2)
P 		308.2
(-1.5)
P 		225.4
(-3)
P 		287.5
(-1.9)
P 		333
B 575.7
(3)
P 		309.8
(-2.4)
P 		441.4
(0.3)
P 		280.5
(-3)
P 		290.9
(-2.8)
P 		556.3
(2.6)
P 		295
C 653.1
(3)
P 		518.6
(1.2)
P 		377.5
(-0.7)
P 		208.9
(-3)
P 		267.1
(-2.2)
P 		397.5
(-0.5)
P 		444
avr 595.9
(3) 		402.9
(-0.5) 		408.1
(-0.4) 		265.9
(-2.9) 		261.1
(-3) 		413.8
(-0.3) 		335
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 237.8
(3)
P 		95.9
(-3)
P 		141.3
(-1.1)
P 		186.4
(0.8)
P 		142
B 203.9
(0.1)
P 		114.2
(-3)
P 		153.6
(-1.6)
P 		286.9
(3)
P 		173
C 208
(0.7)
P 		127.6
(-3)
P 		215.5
(1.1)
P 		257
(3)
P 		129
avr 216.6
(1.8) 		112.6
(-3) 		170.1
(-0.4) 		243.4
(3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 103
(0.1)
P 		135.3
(3)
P 		88.3
(-1.2)
P 		78.2
(-2.1)
P 		68
(-3)
P 		70
(-2.8)
P 		67
B 200.3
(2.7)
P 		103.1
(-1.7)
P 		107.2
(-1.5)
P 		74.3
(-3)
P 		118.2
(-1)
P 		207.4
(3)
P 		133
C 242.1
(3)
P 		158.2
(0.5)
P 		96.1
(-1.4)
P 		42
(-3)
P 		86.4
(-1.7)
P 		133.1
(-0.3)
P 		200
avr 181.8
(3) 		132.2
(0.5) 		97.2
(-1.3) 		64.8
(-3) 		90.9
(-1.7) 		136.8
(0.7) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183852_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3082
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.5 NCBI
Target Description Y48E1B.5 /REP_DB=WormBase Gene ID /WP=CE14860 /TR=O18199 /GB=CAB07691.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064449(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064449 NCBI Caenorhabditis elegans Y48E1B.5 (Y48E1B.5) mRNA, complete cds. 9/11 None
GENEFINDER00000010080 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13568113:13569906:-1 9/11 None
Y48E1B.5 ENSEMBL cdna:known chromosome:CEL140:II:13568008:13574957:-1 gene:Y48E1B.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010059 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13568109-13574954(-) 99.27 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48E1B.5
Entrez Gene 175001 Entrez gene
SwissProt O18199 EMBL-EBI
WormBase CE35196 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07691 Hypothetical protein Y48E1B.5 [Caenorhabditis elegans] ref|NP_496850.2| Y48E1B.5 [Caenorhabditis elegans] 0.0
blast CAE73329 Hypothetical protein CBG20758 [Caenorhabditis briggsae] 0.0
blast AAF64254 novel immunogenic protein NIP-2 [Onchocerca volvulus] 7.0E-68
blast CAB07691 Hypothetical protein Y48E1B.5 [Caenorhabditis elegans] ref|NP_496850.2| Y48E1B.5 [Caenorhabditis elegans] 1.0E-41
blast CAE73329 Hypothetical protein CBG20758 [Caenorhabditis briggsae] 1.0E-34
blast AAF64254 novel immunogenic protein NIP-2 [Onchocerca volvulus] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:183852_S_AT
accattggtactgagcgtttttccgtaaattttccgaaaaaaaaaaccggaaaacacaaa
aattttagatttttcggtgtgttttccgaaaaaaaaaacagaattgctcatcaatttttc
cgttttttttacgaaaaaaaaaatccggaaaaaaatacggattttttttattttccggtg
tttttcaatttttcaatttttacgaaaaaaaaaattgaaaaaaaaaacacgaaaatttca
gatttattaaaaaatcttgtccgtggagtacaattggtgaacggacgtcttgatttggtt
gccatgcagcttaacacactgaaaccaacatcagaagctggaaataatgacgaaaagaat
attgtgtggatcgagaagggtctccgtctctacaagccaacgccctactatgagcaaatg
gacactgtggagaagctcgatatgaccgtttttcacaaatttgtcgccttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATTGGTACTGAGCGTTTTTCCG 473 87 1417 Antisense
TGGTACTGAGCGTTTTTCCGTAAAT 56 551 1422 Antisense
AGTACAATTGGTGAACGGACGTCTT 492 57 1683 Antisense
CGGACGTCTTGATTTGGTTGCCATG 311 243 1698 Antisense
GGTTGCCATGCAGCTTAACACACTG 562 507 1713 Antisense
AGCTTAACACACTGAAACCAACATC 582 77 1724 Antisense
TGGATCGAGAAGGGTCTCCGTCTCT 257 551 1783 Antisense
AGCCAACGCCCTACTATGAGCAAAT 176 85 1811 Antisense
TATGAGCAAATGGACACTGTGGAGA 177 657 1825 Antisense
GAAGCTCGATATGACCGTTTTTCAC 341 343 1848 Antisense
GTTTTTCACAAATTTGTCGCCTTGA 297 449 1864 Antisense
Sequence Source Affymetrix Proprietary Database