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[183851_at]

Description D2062.7 /REP_DB=WormBase Gene ID /WP=CE09094 /TR=O16595 /GB=AAB66068.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      6grp_total > 78      4grp_total > 12      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 67.7
(-1.3)
A 		55.8
(-3)
A 		88.4
(1.6)
P 		98.6
(3)
A 		43
B 60.9
(3)
A 		53.1
(0.8)
A 		39.5
(-3)
A 		51.9
(0.5)
A 		21
C 77.7
(-1.1)
P 		81
(-0.9)
A 		52.5
(-3)
A 		132.2
(3)
P 		80
avr 68.8
(-1.5) 		63.3
(-2.4) 		60.1
(-3) 		94.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 63
(-3)
A 		82.8
(-2.2)
P 		67.7
(-2.8)
P 		69
(-2.8)
P 		123.9
(-0.6)
P 		212.9
(3)
P 		150
B 62.4
(-0.8)
M 		31.9
(-1.9)
A 		1.9
(-3)
A 		82.4
(-0)
A 		102.5
(0.7)
P 		164.8
(3)
P 		163
C 81.8
(-2.4)
P 		79.8
(-2.5)
P 		87.7
(-2)
A 		70.8
(-3)
A 		81.4
(-2.4)
P 		176.9
(3)
P 		106
avr 69.1
(-2.2) 		64.8
(-2.4) 		52.4
(-3) 		74.1
(-2) 		102.6
(-0.7) 		184.9
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 24.6
(3)
A 		12.1
(-3)
A 		23.1
(2.3)
P 		14.4
(-1.9)
A 		13
B 19.4
(3)
A 		13.1
(-0.7)
A 		9.1
(-3)
A 		11.1
(-1.8)
A 		10
C 25.7
(3)
P 		23.3
(1.1)
A 		18.3
(-3)
A 		22.3
(0.2)
P 		7
avr 23.2
(3) 		16.2
(-2.8) 		16.8
(-2.3) 		15.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 11.6
(-3)
A 		29.5
(-0.3)
P 		14.7
(-2.5)
P 		17.5
(-2.1)
P 		37.4
(0.9)
P 		51.8
(3)
P 		40
B 21.7
(-0.9)
M 		10.6
(-2)
A 		0.5
(-3)
A 		21.8
(-0.9)
A 		41.6
(1)
P 		61.4
(3)
P 		61
C 30.3
(-0.9)
P 		24.3
(-1.7)
P 		22.3
(-1.9)
A 		14.2
(-3)
A 		26.3
(-1.4)
P 		59.2
(3)
P 		45
avr 21.2
(-1.8) 		21.5
(-1.8) 		12.5
(-3) 		17.8
(-2.3) 		35.1
(0) 		57.5
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183851_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5754
Sequence Type Exemplar sequence
Representative Public ID D2062.7 NCBI
Target Description D2062.7 /REP_DB=WormBase Gene ID /WP=CE09094 /TR=O16595 /GB=AAB66068.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061905 NCBI Caenorhabditis elegans D2062.7 (D2062.7) mRNA, complete cds. 11/11 None
SNAP00000009049 ENSEMBL cdna:SNAP chromosome:CEL140:II:2616935:2617339:1 11/11 None
GENEFINDER00000009062 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2616935:2617339:1 11/11 None
D2062.7 ENSEMBL cdna:known chromosome:CEL140:II:2616935:2617339:1 gene:D2062.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2616933-2617338(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2062.7
Entrez Gene 183956 Entrez gene
SwissProt O16595 EMBL-EBI
WormBase CE09094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494306 D2062.7 [Caenorhabditis elegans] gb|AAB66068.1| Hypothetical protein D2062.7 [Caenorhabditis elegans] 2.0E-53
blast NP_494307 D2062.6 [Caenorhabditis elegans] gb|AAB66067.1| Hypothetical protein D2062.6 [Caenorhabditis elegans] 2.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494306.1 2 7-24,90-112
D2062.7 2 7-24,90-112
SNAP00000009049 2 7-24,90-112
GENEFINDER00000009062 2 7-24,90-112
Sequence
Target Sequence 
>C. ELEGANS:183851_AT
gcatctaatggcaccactgatatggaggatgctttcaataagaaaaaagctgagatggtt
aaaaattctgaagaagatatggccaagatggaaaaggagcgtgaaaagaataaaggaatc
ttcgccaaaattctcgcatacggacttgccactgtgattgtgacatttgttgtgtgcgtg
ggagcttccgctgctgcaaccatcatcactatcgtctgcgttcgtcgtcacaaccggaac
aagatgggtggaggaggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCTAATGGCACCACTGATATGG 85 307 127 Antisense
GATATGGAGGATGCTTTCAATAAGA 268 425 145 Antisense
AATCTTCGCCAAAATTCTCGCATAC 255 171 243 Antisense
AAATTCTCGCATACGGACTTGCCAC 399 115 254 Antisense
CATACGGACTTGCCACTGTGATTGT 305 213 263 Antisense
GGACTTGCCACTGTGATTGTGACAT 272 525 268 Antisense
GATTGTGACATTTGTTGTGTGCGTG 174 435 282 Antisense
TTGTTGTGTGCGTGGGAGCTTCCGC 309 705 293 Antisense
GCAACCATCATCACTATCGTCTGCG 174 321 322 Antisense
CGTTCGTCGTCACAACCGGAACAAG 11 3 345 Antisense
GGAACAAGATGGGTGGAGGAGGTCA 335 529 362 Antisense
Sequence Source Affymetrix Proprietary Database