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[183850_at]

Description Y48E1B.8 /REP_DB=WormBase Gene ID /WP=CE14866 /TR=O45951 /GB=CAB07694.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 52      4grp_high_8_8 > 55      6grp_total > 52      4grp_total > 48      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2386
1 2 3 4 range
A 35.9
(-3)
P 		1298.7
(0.2)
P 		2420.7
(3)
P 		85.4
(-2.9)
A 		2385
B 35.1
(-3)
A 		1427.9
(0.7)
P 		2322.2
(3)
P 		70.1
(-2.9)
P 		2287
C 46.1
(-3)
A 		1269.7
(0.8)
P 		1996.6
(3)
P 		78.2
(-2.9)
P 		1951
avr 39
(-3) 		1332.1
(0.5) 		2246.5
(3) 		77.9
(-2.9) 		2208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 774
1 2 3 4 5 6 range
A 89.4
(-2.7)
P 		265.6
(-1)
P 		708
(3)
P 		447.1
(0.6)
P 		163
(-2)
P 		51.4
(-3)
P 		657
B 45.5
(-3)
P 		251.3
(-1.4)
P 		819.3
(3)
P 		366.5
(-0.5)
P 		161.5
(-2.1)
P 		71.4
(-2.8)
P 		774
C 47.9
(-3)
P 		253.5
(-1)
P 		665.1
(3)
P 		399.6
(0.4)
P 		158.2
(-1.9)
P 		48.6
(-3)
A 		617
avr 60.9
(-3) 		256.8
(-1.2) 		730.8
(3) 		404.4
(0.1) 		160.9
(-2.1) 		57.1
(-3) 		674
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 685
1 2 3 4 range
A 13.1
(-3)
P 		281.9
(-0.4)
P 		632.8
(3)
P 		12.5
(-3)
A 		620
B 11.2
(-3)
A 		352.7
(0.9)
P 		538.1
(3)
P 		14.9
(-3)
P 		527
C 15.3
(-3)
A 		365
(0.1)
P 		695.9
(3)
P 		13.2
(-3)
P 		683
avr 13.2
(-3) 		333.2
(0.2) 		622.3
(3) 		13.5
(-3) 		609

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 16.5
(-2.8)
P 		94.5
(0.5)
P 		154.2
(3)
P 		113.4
(1.3)
P 		49.2
(-1.4)
P 		12.5
(-3)
P 		142
B 15.8
(-3)
P 		83.7
(-0.8)
P 		199
(3)
P 		97.1
(-0.3)
P 		65.6
(-1.4)
P 		26.6
(-2.6)
P 		183
C 17.7
(-2.9)
P 		77.4
(-0.6)
P 		169.3
(3)
P 		80.4
(-0.5)
P 		51.2
(-1.6)
P 		16.3
(-3)
A 		153
avr 16.7
(-3) 		85.2
(-0.4) 		174.2
(3) 		97
(0.1) 		55.3
(-1.5) 		18.5
(-2.9) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3497
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.8 NCBI
Target Description Y48E1B.8 /REP_DB=WormBase Gene ID /WP=CE14866 /TR=O45951 /GB=CAB07694.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064452 NCBI Caenorhabditis elegans Y48E1B.8 (Y48E1B.8) mRNA, complete cds. 11/11 None
SNAP00000010060 ENSEMBL cdna:SNAP chromosome:CEL140:II:13575957:13588903:1 11/11 None
Y48E1B.8 ENSEMBL cdna:known chromosome:CEL140:II:13585651:13588903:1 gene:Y48E1B.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010073 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13585647-13588900(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48E1B.8
Entrez Gene 175002 Entrez gene
SwissProt O45951 EMBL-EBI
WormBase CE14866 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07694 Hypothetical protein Y48E1B.8 [Caenorhabditis elegans] ref|NP_496853.1| Y48E1B.8 [Caenorhabditis elegans] 0.0
blast CAE73327 Hypothetical protein CBG20756 [Caenorhabditis briggsae] 0.0
blast CAB07693 Hypothetical protein Y48E1B.7 [Caenorhabditis elegans] ref|NP_496852.1| Y48E1B.7 [Caenorhabditis elegans] 0.0
blast CAE73328 Hypothetical protein CBG20757 [Caenorhabditis briggsae] 0.0
blast CAB16530 Hypothetical protein Y57G11C.31 [Caenorhabditis elegans] ref|NP_502775.2| Y57G11C.31 [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496853.1 1 13-35
Y48E1B.8 1 13-35
SNAP00000010060 2 708-730,1051-1073
Sequence
Target Sequence 
>C. ELEGANS:183850_AT
aacggagccaactggttcattcgggctaacaatgagacgcagttctttttcgaaaagttg
tcagagaagttggctcattggtatactcctgatgttggagttatgattcatcagtgtaat
acttgggacaagccaacgtgtgcatttattccgtataatgtgacctattcctgggaatgg
atgttcagtgatcagtcgaaccctccgtatcttctccagctagactgcgagacgaacgga
ggtaccaaactaatgcagctaggaagatatggcttccattttgtaaatccagatgggacg
tgcaataatgaaaagatctcctccgccaaatctcgtatggaaaatggtactgtagaagtt
caaatctcgaaaaacctcccatcctggggacgtttacaattcaagctgtactggtacatc
acagaatacctcctatggatcccggtactcggggagtatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGAGCCAACTGGTTCATTCGGG 88 107 655 Antisense
GAAGTTGGCTCATTGGTATACTCCT 451 337 720 Antisense
CAAGCCAACGTGTGCATTTATTCCG 281 185 783 Antisense
GTATAATGTGACCTATTCCTGGGAA 269 453 807 Antisense
TGTTCAGTGATCAGTCGAACCCTCC 332 561 836 Antisense
TCTTCTCCAGCTAGACTGCGAGACG 187 617 864 Antisense
ATAATGAAAAGATCTCCTCCGCCAA 429 25 959 Antisense
CTCCTCCGCCAAATCTCGTATGGAA 135 235 972 Antisense
CCATCCTGGGGACGTTTACAATTCA 23 267 1033 Antisense
ACAGAATACCTCCTATGGATCCCGG 509 107 1075 Antisense
GGATCCCGGTACTCGGGGAGTATCT 406 511 1091 Antisense
Sequence Source Affymetrix Proprietary Database