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[183849_at]

Description ZK355.6 /REP_DB=WormBase Gene ID /WP=CE24725 /TR=Q9N4N6 /GB=AAF40000.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 4.1
(-2.9)
A 		6.6
(-1.5)
A 		14.9
(3)
A 		3.9
(-3)
A 		11
B 3.1
(-2.8)
A 		2.5
(-3)
A 		4.1
(-2.5)
A 		20.1
(3)
A 		18
C 20.9
(3)
A 		4.5
(-2.2)
A 		1.8
(-3)
A 		7
(-1.4)
A 		19
avr 9.4
(2.1) 		4.5
(-3) 		6.9
(-0.5) 		10.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 2.4
(-3)
A 		17.4
(3)
A 		6.6
(-1.3)
A 		2.4
(-3)
A 		8.6
(-0.5)
A 		2.5
(-3)
A 		15
B 3.2
(-2.8)
A 		3.9
(-2.7)
A 		18
(-0.8)
A 		46.6
(3)
A 		2
(-3)
A 		6
(-2.5)
A 		45
C 1.7
(-3)
A 		17.2
(-0.5)
A 		3.8
(-2.7)
A 		39.1
(3)
A 		3.5
(-2.7)
A 		2.4
(-2.9)
A 		37
avr 2.4
(-3) 		12.8
(-0.7) 		9.5
(-1.4) 		29.4
(3) 		4.7
(-2.5) 		3.6
(-2.7) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.5
(-1.4)
A 		1.4
(-1.5)
A 		3.9
(3)
A 		0.6
(-3)
A 		3
B 1
(-2.4)
A 		0.6
(-3)
A 		1
(-2.4)
A 		4.3
(3)
A 		4
C 6.9
(3)
A 		1.3
(-2.3)
A 		0.6
(-3)
A 		1.2
(-2.4)
A 		6
avr 3.1
(3) 		1.1
(-3) 		1.8
(-0.9) 		2
(-0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.5
(-3)
A 		6.2
(3)
A 		1.4
(-2.1)
A 		0.6
(-2.9)
A 		2.6
(-0.8)
A 		0.6
(-2.9)
A 		6
B 1.1
(-2.8)
A 		1.3
(-2.7)
A 		4.4
(-1.1)
A 		12.3
(3)
A 		0.8
(-3)
A 		2.2
(-2.3)
A 		12
C 0.6
(-3)
A 		5.2
(0.8)
A 		1
(-2.7)
A 		7.9
(3)
A 		1.1
(-2.6)
A 		0.8
(-2.8)
A 		7
avr 0.7
(-3) 		4.2
(0.4) 		2.3
(-1.5) 		6.9
(3) 		1.5
(-2.2) 		1.2
(-2.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5656
Sequence Type Exemplar sequence
Representative Public ID ZK355.6 NCBI
Target Description ZK355.6 /REP_DB=WormBase Gene ID /WP=CE24725 /TR=Q9N4N6 /GB=AAF40000.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062004 NCBI Caenorhabditis elegans ZK355.6 (ZK355.6) mRNA, complete cds. 11/11 None
ZK355.6 ENSEMBL cdna:known chromosome:CEL140:II:2938139:2940843:-1 gene:ZK355.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021476 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2938137-2940842(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK355.6
Entrez Gene 191301 Entrez gene
SwissProt Q9N4N6 EMBL-EBI
WormBase CE24725 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF40000 Hypothetical protein ZK355.6 [Caenorhabditis elegans] ref|NP_494405.1| ZK355.6 [Caenorhabditis elegans] 0.0
blast AAC68709 Hypothetical protein T11F1.2 [Caenorhabditis elegans] ref|NP_494411.1| T11F1.2 [Caenorhabditis elegans] 1.0E-120
blast AAC68711 Hypothetical protein T11F1.6 [Caenorhabditis elegans] ref|NP_494407.3| T11F1.6 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.7E-25
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.2E-5
Sequence
Target Sequence 
>C. ELEGANS:183849_AT
ggcttgctgttccatctttgaataactttgctattgatggctttgggccagtgatcatga
acctggaaaatcttcacccggatttctgtctaaccttcggagaattgaagcttttcatgg
aagagctcgtttatttcacaaatattcaagcgaaatactgcggaatagatacattttttg
aggaaaatgaattttgtgaatttttaaatatgagctcacttgagccattttgtctgttta
tctacggaaaagtcgttttggaagctggagatgaggaattcgtgtggaaactgaaaaaaa
tgacacatttattcgggtctctggtggttcggaatacccaattggaagacttgggatttt
tgggaaagctgaaatttattgggaacttggacagtgatgcccttactgttcaaattgtgg
ggaaccataggctgacgtttgcctatattccttggttggagaacatcataaccagcggca
atcgtatcataattgtggacaataattccttattaaaaactgaaaagttttctttatttg
ccgccaactttcagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTGCTGTTCCATCTTTGAATAA 604 537 812 Antisense
GGCTTTGGGCCAGTGATCATGAACC 680 537 850 Antisense
GAACCTGGAAAATCTTCACCCGGAT 195 311 870 Antisense
CCGGATTTCTGTCTAACCTTCGGAG 278 261 889 Antisense
CTCACTTGAGCCATTTTGTCTGTTT 224 229 1026 Antisense
ACATTTATTCGGGTCTCTGGTGGTT 419 103 1116 Antisense
GGAACTTGGACAGTGATGCCCTTAC 464 529 1193 Antisense
GATGCCCTTACTGTTCAAATTGTGG 220 415 1207 Antisense
CTGACGTTTGCCTATATTCCTTGGT 690 237 1243 Antisense
GAACATCATAACCAGCGGCAATCGT 112 349 1272 Antisense
CTTTATTTGCCGCCAACTTTCAGAC 705 221 1343 Antisense
Sequence Source Affymetrix Proprietary Database