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[183848_at]

Description F49E12.2 /REP_DB=WormBase Gene ID /WP=CE03379 /TR=Q20615 /GB=CAA91387.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 93      4grp_total > 10      6grp_cgc > 89      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 67.8
(-2.3)
P 		56.2
(-3)
A 		63.9
(-2.5)
A 		149.2
(3)
P 		93
B 52.4
(-2.9)
P 		52.3
(-2.9)
P 		51.5
(-3)
A 		93.6
(3)
P 		42
C 50.1
(-3)
P 		88.5
(-1.2)
P 		66.3
(-2.2)
A 		178.2
(3)
P 		128
avr 56.8
(-3) 		65.7
(-2.4) 		60.6
(-2.7) 		140.3
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2023
1 2 3 4 5 6 range
A 56.4
(-2.9)
A 		28.4
(-3)
A 		61.5
(-2.9)
P 		60.5
(-2.9)
A 		2051.3
(3)
P 		406
(-1.9)
P 		2023
B 53.8
(-3)
P 		78.8
(-2.9)
P 		58.5
(-3)
A 		47.5
(-3)
P 		2014.1
(3)
P 		584.6
(-1.4)
P 		1967
C 75.7
(-3)
P 		127
(-2.8)
P 		93.9
(-2.9)
M 		94.6
(-2.9)
A 		1813.7
(3)
P 		419.5
(-1.8)
P 		1738
avr 62
(-3) 		78.1
(-2.9) 		71.3
(-3) 		67.5
(-3) 		1959.7
(3) 		470
(-1.7) 		1898
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 24.7
(3)
P 		12.2
(-3)
A 		16.7
(-0.8)
A 		21.8
(1.6)
P 		13
B 16.7
(0.6)
P 		12.9
(-2.3)
P 		11.9
(-3)
A 		20
(3)
P 		8
C 16.6
(-3)
P 		25.5
(1)
P 		23.1
(-0.1)
A 		30
(3)
P 		13
avr 19.3
(-0.9) 		16.9
(-3) 		17.2
(-2.7) 		23.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 808
1 2 3 4 5 6 range
A 10.4
(-3)
A 		10.1
(-3)
A 		13.4
(-3)
P 		15.3
(-2.9)
A 		619
(3)
P 		98.9
(-2.1)
P 		609
B 18.7
(-3)
P 		26.2
(-2.9)
P 		14.2
(-3)
A 		12.6
(-3)
P 		818.3
(3)
P 		218
(-1.5)
P 		806
C 28.1
(-2.9)
P 		38.8
(-2.8)
P 		23.9
(-2.9)
M 		19
(-3)
A 		586.9
(3)
P 		140.4
(-1.7)
P 		568
avr 19.1
(-3) 		25
(-2.9) 		17.2
(-3) 		15.6
(-3) 		674.7
(3) 		152.4
(-1.8) 		659
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3983
Sequence Type Exemplar sequence
Representative Public ID F49E12.2 NCBI
Target Description F49E12.2 /REP_DB=WormBase Gene ID /WP=CE03379 /TR=Q20615 /GB=CAA91387.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063366 NCBI Caenorhabditis elegans Downstream Of DAF-16 (regulated by DAF-16) family member (dod-23) (dod-23) mRNA, complete cds. 11/11 None
SNAP00000030000 ENSEMBL cdna:SNAP chromosome:CEL140:II:8398307:8399076:-1 11/11 None
GENEFINDER00000030012 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8398307:8404766:-1 11/11 None
F49E12.2 ENSEMBL cdna:known chromosome:CEL140:II:8398307:8399076:-1 gene:F49E12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8398303-8399073(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dod-23
Ensembl F49E12.2
Entrez Gene 186056 Entrez gene
SwissProt Q20615 EMBL-EBI
WormBase CE03379 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91388 Hypothetical protein F49E12.1 [Caenorhabditis elegans] ref|NP_495768.1| F49E12.1 [Caenorhabditis elegans] 0.0
blast CAE57659 Hypothetical protein CBG00649 [Caenorhabditis briggsae] 0.0
blast AAK68180 Hypothetical protein C16C8.2 [Caenorhabditis elegans] ref|NP_494540.1| C16C8.2 [Caenorhabditis elegans] 1.0E-134
blast CAA91387 Hypothetical protein F49E12.2 [Caenorhabditis elegans] ref|NP_495767.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-23) [Caenorhabditis elegans] 5.0E-74
blast CAE57658 Hypothetical protein CBG00648 [Caenorhabditis briggsae] 7.0E-27
blast AAF36079 Calpain family protein 6 [Caenorhabditis elegans] ref|NP_500081.1| CaLPain family member (clp-6) [Caenorhabditis elegans] 6.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.4E-15
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183848_AT
tgttcttgtggctcttttggcagtccacgaggtgtcatcatctgtgcaccaccgtcatca
taagaagggaatcatccacagagatgctgacgagatgatagaattcccgaagagaagcaa
cgatcgacttggcgagactatgattcatggccaaatcatttgccacggaactcccctcga
ctatgttcgaccatacctcagctcaaagaaataccctcgagtgattatcaatatttgtgt
ttccgatgatggtggatggtatcgtttgacgactggaaacatgtttgatcttgaaggaag
tgttacattcactgttagacatcagtgtctaatggataaacttcccccaatgattcagtg
cgctgtaccatactacactactgaggttactattgatctcagcagcaacaccacctacat
cggacgtagcttcgagctctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTTGTGGCTCTTTTGGCAGTC 138 561 39 Antisense
TTGGCAGTCCACGAGGTGTCATCAT 72 709 55 Antisense
GAGGTGTCATCATCTGTGCACCACC 249 403 67 Antisense
GTGCACCACCGTCATCATAAGAAGG 324 479 82 Antisense
CCAAATCATTTGCCACGGAACTCCC 608 275 189 Antisense
TTCGACCATACCTCAGCTCAAAGAA 157 697 224 Antisense
TAAACTTCCCCCAATGATTCAGTGC 32 641 375 Antisense
TTCAGTGCGCTGTACCATACTACAC 266 685 392 Antisense
TATTGATCTCAGCAGCAACACCACC 456 665 429 Antisense
CAACACCACCTACATCGGACGTAGC 216 185 444 Antisense
TCGGACGTAGCTTCGAGCTCTCAAA 363 607 458 Antisense
Sequence Source Affymetrix Proprietary Database