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[183847_at]

Description C15F1.1 /REP_DB=WormBase Gene ID /WP=CE23544 /TR=Q9N5X8 /GB=AAF39761.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1401
1 2 3 4 range
A 317.2
(-1.9)
P 		1385.2
(3)
P 		1355.5
(2.9)
P 		73.6
(-3)
A 		1312
B 350.9
(-1.8)
P 		1404.8
(2.7)
P 		1464.6
(3)
P 		63.7
(-3)
A 		1401
C 391.5
(-1.8)
P 		1227.5
(2.3)
P 		1378.5
(3)
P 		138.4
(-3)
A 		1240
avr 353.2
(-1.8) 		1339.2
(2.7) 		1399.5
(3) 		91.9
(-3) 		1308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1042
1 2 3 4 5 6 range
A 278.3
(-3)
P 		946.6
(1.1)
P 		806.3
(0.2)
P 		937.2
(1)
P 		1260.2
(3)
P 		407.3
(-2.2)
P 		982
B 269.8
(-3)
P 		1044
(1.5)
P 		807.6
(0.1)
P 		903.7
(0.7)
P 		1311.4
(3)
P 		395.1
(-2.3)
P 		1042
C 307.1
(-3)
P 		1113.9
(2.4)
P 		644
(-0.7)
P 		1200.9
(3)
P 		1134.2
(2.6)
P 		564.2
(-1.3)
P 		894
avr 285.1
(-3) 		1034.8
(1.7) 		752.6
(-0) 		1013.9
(1.6) 		1235.3
(3) 		455.5
(-1.9) 		950
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 470
1 2 3 4 range
A 115.5
(-1.2)
P 		300.7
(2.1)
P 		354.4
(3)
P 		10.8
(-3)
A 		344
B 111.9
(-1.2)
P 		346.9
(3)
P 		339.4
(2.9)
P 		13.6
(-3)
A 		333
C 129.6
(-1.6)
P 		352.9
(1.3)
P 		480.5
(3)
P 		23.3
(-3)
A 		457
avr 119
(-1.4) 		333.5
(2.1) 		391.4
(3) 		15.9
(-3) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 482
1 2 3 4 5 6 range
A 51.3
(-3)
P 		336.7
(2.2)
P 		175.6
(-0.7)
P 		237.7
(0.4)
P 		380.3
(3)
P 		99.2
(-2.1)
P 		329
B 93.9
(-3)
P 		347.5
(0.5)
P 		196.1
(-1.6)
P 		239.4
(-1)
P 		532.8
(3)
P 		147.3
(-2.3)
P 		439
C 113.8
(-3)
P 		339.9
(2.4)
P 		163.9
(-1.8)
P 		241.5
(0)
P 		367
(3)
P 		188.9
(-1.2)
P 		253
avr 86.3
(-3) 		341.4
(1.5) 		178.5
(-1.4) 		239.5
(-0.3) 		426.7
(3) 		145.1
(-2) 		340
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4901
Sequence Type Exemplar sequence
Representative Public ID C15F1.1 NCBI
Target Description C15F1.1 /REP_DB=WormBase Gene ID /WP=CE23544 /TR=Q9N5X8 /GB=AAF39761.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063033 NCBI Caenorhabditis elegans C15F1.1 (C15F1.1) mRNA, complete cds. 11/11 None
SNAP00000007590 ENSEMBL cdna:SNAP chromosome:CEL140:II:6989824:6991513:1 11/11 None
GENEFINDER00000007595 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6989824:6991513:1 11/11 None
C15F1.1 ENSEMBL cdna:known chromosome:CEL140:II:6988709:6991513:1 gene:C15F1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6988704-6991509(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15F1.1
Entrez Gene 182638 Entrez gene
SwissProt Q9N5X8 EMBL-EBI
WormBase CE23544 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39761 Hypothetical protein C15F1.1 [Caenorhabditis elegans] ref|NP_495434.1| C15F1.1 [Caenorhabditis elegans] 0.0
blast AAF39761 Hypothetical protein C15F1.1 [Caenorhabditis elegans] ref|NP_495434.1| C15F1.1 [Caenorhabditis elegans] 1.0E-126
blast CAE66008 Hypothetical protein CBG11199 [Caenorhabditis briggsae] 1.0E-122
blast CAE66008 Hypothetical protein CBG11199 [Caenorhabditis briggsae] 1.0E-121
blast CAE75505 Hypothetical protein CBG23515 [Caenorhabditis briggsae] 2.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.2E-4
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:183847_AT
ttacgtcgtctttctcaggaactcacaccaattggtttcctagtagggaaatggagatct
gaacatggaggaaaagcaatcttcccaacaattccgaaattcacatttggagaagaaatc
gaaatttcaattccaggcgatgcaatgcaatcggctcaagctcttaactacacagcattt
gcctggtcgataaatgataaagatgagttgcacagtgaatatggatatatttctgtgaaa
ccaaacacaaaagaagtcgcactgacaactgtaatgaataatggttttgtgacagtcgaa
gaaggtccagtcaatggaaatcaaattagattccggcttaaggatatcggaagaattagt
ttcagcagagatttgcctgttcatgatctcgtccgagaatggactcttctggatcgatca
acacttcaagcccgtctgaacatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACGTCGTCTTTCTCAGGAACTCA 338 681 589 Antisense
GGAACTCACACCAATTGGTTTCCTA 160 527 606 Antisense
AAAAGCAATCTTCCCAACAATTCCG 81 131 660 Antisense
ATTTCAATTCCAGGCGATGCAATGC 544 15 712 Antisense
GATGCAATGCAATCGGCTCAAGCTC 598 411 727 Antisense
CGGCTCAAGCTCTTAACTACACAGC 18 243 740 Antisense
ACTACACAGCATTTGCCTGGTCGAT 87 101 755 Antisense
AGATTTGCCTGTTCATGATCTCGTC 123 67 957 Antisense
AATGGACTCTTCTGGATCGATCAAC 328 163 986 Antisense
CTGGATCGATCAACACTTCAAGCCC 40 241 997 Antisense
CACTTCAAGCCCGTCTGAACATGGA 84 197 1010 Antisense
Sequence Source Affymetrix Proprietary Database