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[183846_at]

Description Y56A3A.5 /REP_DB=WormBase Gene ID /WP=CE22576 /TR=Q9U243 /GB=CAB60496.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 4.6
(-2.5)
A 		2.8
(-3)
A 		5.4
(-2.3)
A 		25.7
(3)
A 		23
B 7.8
(-3)
A 		8.1
(-2.9)
A 		26.9
(0.9)
A 		37.3
(3)
A 		30
C 6.1
(-2.6)
A 		49.6
(1.8)
A 		1.6
(-3)
A 		61.9
(3)
A 		60
avr 6.2
(-3) 		20.2
(-0.6) 		11.3
(-2.1) 		41.6
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.8
(-2.8)
A 		2
(-3)
A 		4.8
(-2.4)
A 		3.3
(-2.7)
A 		25.7
(2.4)
A 		28.5
(3)
A 		27
B 25.4
(3)
A 		5.8
(-2.2)
A 		2.9
(-3)
A 		7.4
(-1.8)
A 		2.9
(-3)
A 		12.7
(-0.4)
A 		23
C 3.6
(-2.6)
A 		6.1
(-1.9)
A 		6.6
(-1.8)
A 		25
(3)
A 		23.1
(2.5)
A 		1.9
(-3)
A 		23
avr 10.6
(-0.1) 		4.6
(-3) 		4.8
(-2.9) 		11.9
(0.5) 		17.2
(3) 		14.4
(1.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.7
(-0.9)
A 		0.6
(-3)
A 		1.4
(-1.5)
A 		3.8
(3)
A 		3
B 2.5
(-2.5)
A 		2
(-3)
A 		6.2
(1.2)
A 		8
(3)
A 		6
C 2
(-2.4)
A 		14.3
(3)
A 		0.6
(-3)
A 		10.4
(1.3)
A 		14
avr 2.1
(-3) 		5.6
(1) 		2.7
(-2.3) 		7.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-2.8)
A 		1
(-2.6)
A 		0.8
(-2.8)
A 		7.7
(3)
A 		6.9
(2.3)
A 		7
B 8.9
(3)
A 		1.9
(-2.1)
A 		0.7
(-3)
A 		2
(-2)
A 		1.2
(-2.6)
A 		4.7
(-0.1)
A 		8
C 1.3
(-2.4)
A 		1.9
(-1.9)
A 		1.7
(-2)
A 		5
(0.8)
A 		7.5
(3)
A 		0.6
(-3)
A 		7
avr 3.6
(0.4) 		1.5
(-2.5) 		1.1
(-3) 		2.6
(-1) 		5.5
(3) 		4.1
(1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6899
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.5 NCBI
Target Description Y56A3A.5 /REP_DB=WormBase Gene ID /WP=CE22576 /TR=Q9U243 /GB=CAB60496.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067141 NCBI Caenorhabditis elegans Y56A3A.5 (Y56A3A.5) mRNA, complete cds. 11/11 None
SNAP00000035193 ENSEMBL cdna:SNAP chromosome:CEL140:III:11886392:11894476:-1 11/11 None
GENEFINDER00000035240 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11886392:11892848:-1 11/11 None
Y56A3A.5 ENSEMBL cdna:known chromosome:CEL140:III:11886392:11892848:-1 gene:Y56A3A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11886387-11892844(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y56A3A.5
Entrez Gene 190325 Entrez gene
SwissProt Q9U243 EMBL-EBI
WormBase CE22576 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4040 amidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60496 Hypothetical protein Y56A3A.5 [Caenorhabditis elegans] ref|NP_499542.1| Y56A3A.5 [Caenorhabditis elegans] 0.0
blast CAE67733 Hypothetical protein CBG13308 [Caenorhabditis briggsae] 0.0
blast CAE67735 Hypothetical protein CBG13310 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000120 EMBL-EBI Amidase 6.3E-72
Pfam IPR000120 EMBL-EBI Amidase 2.9E-9
Pfam IPR000120 EMBL-EBI Amidase 6.3E-72
Sequence
Target Sequence 
>C. ELEGANS:183846_AT
tcggctcgtccgttacaaacaagtattcgtgattcgttggctcgcccaacacgtcttact
tccactcgcccaatacactccgctcaaatcaaaacaggtgctgtgtcttggcaaggcgta
caattcggatccggcgtgtgttcggcagaatcaggagaaaacggattcgtacaaaatgaa
gtggattcgatattggaagggattaggcatcgatgcgttgatttgtccctcgtttatcac
ccctgcccaaccattcaaatatccggtccttcttacaactggagccttcataactggtct
attcaacatgctcgactgcccgtccgccgttgtcccagtagctccagtccgtgaaaaaga
aaacgataaattcgagacaaacggggattttgtgctaaaacttcaggcagcagcaataaa
agagacgagtggaatgccaaattctgttcaaatcgtagcacttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCTCGTCCGTTACAAACAAGTA 505 605 1674 Antisense
AAGTATTCGTGATTCGTTGGCTCGC 492 155 1694 Antisense
ACAGGTGCTGTGTCTTGGCAAGGCG 368 107 1767 Antisense
GCAAGGCGTACAATTCGGATCCGGC 387 321 1784 Antisense
GATCCGGCGTGTGTTCGGCAGAATC 19 415 1801 Antisense
ATCGATGCGTTGATTTGTCCCTCGT 150 37 1882 Antisense
CATTCAAATATCCGGTCCTTCTTAC 99 217 1925 Antisense
GTCCTTCTTACAACTGGAGCCTTCA 299 477 1939 Antisense
TGGAGCCTTCATAACTGGTCTATTC 313 549 1953 Antisense
GGTCTATTCAACATGCTCGACTGCC 157 503 1969 Antisense
ATTCTGTTCAAATCGTAGCACTTCC 484 9 2114 Antisense
Sequence Source Affymetrix Proprietary Database