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[183845_s_at]

Description C54G7.2 /REP_DB=WormBase Gene ID /WP=CE04270 /TR=Q18856 /GB=AAA81391.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 13      6grp_total > 08      4grp_total > 10      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1794
1 2 3 4 range
A 3282.4
(-2.2)
P 		3495.9
(-1.4)
P 		3088.4
(-3)
P 		4580
(3)
P 		1492
B 3397.9
(-2.8)
P 		3589.8
(-2)
P 		3345.9
(-3)
P 		4756.8
(3)
P 		1411
C 3203
(-1.9)
P 		3317.5
(-1.3)
P 		2962.8
(-3)
P 		4222.9
(3)
P 		1260
avr 3294.4
(-2.3) 		3467.7
(-1.6) 		3132.4
(-3) 		4519.9
(3) 		1388

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1933
1 2 3 4 5 6 range
A 4063.4
(3)
P 		2808.8
(-0.9)
P 		2996.4
(-0.3)
P 		2667.9
(-1.3)
P 		2130.6
(-3)
P 		2355.4
(-2.3)
P 		1933
B 3501.6
(3)
P 		2607.6
(-0.9)
P 		2859.3
(0.2)
P 		3336.7
(2.3)
P 		2284.8
(-2.4)
P 		2142.6
(-3)
P 		1359
C 3068.2
(2)
P 		2619.6
(-0.4)
P 		3254.7
(3)
P 		3019.2
(1.7)
P 		2197.4
(-2.7)
P 		2146.4
(-3)
P 		1108
avr 3544.4
(3) 		2678.7
(-0.9) 		3036.8
(0.7) 		3007.9
(0.6) 		2204.3
(-3) 		2214.8
(-3) 		1340
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 525
1 2 3 4 range
A 1195.1
(3)
P 		758.9
(-2)
P 		807.4
(-1.4)
P 		670.4
(-3)
P 		525
B 1083.6
(3)
P 		886.6
(-0.8)
P 		775.3
(-3)
P 		1013.7
(1.6)
P 		308
C 1060.3
(3)
P 		953.8
(1.2)
P 		1032.6
(2.5)
P 		712
(-3)
P 		348
avr 1113
(3) 		866.4
(-1.7) 		871.8
(-1.6) 		798.7
(-3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 645
1 2 3 4 5 6 range
A 749.1
(-0.5)
P 		998.9
(3)
P 		652.6
(-1.9)
P 		676.6
(-1.5)
P 		642.9
(-2)
P 		573.5
(-3)
P 		425
B 1218.4
(3)
P 		868
(-1)
P 		694.3
(-3)
P 		883.8
(-0.8)
P 		928.3
(-0.3)
P 		799
(-1.8)
P 		524
C 1137.2
(3)
P 		799.3
(-0.8)
P 		828.4
(-0.5)
P 		607.2
(-3)
P 		711
(-1.8)
P 		718.5
(-1.7)
P 		530
avr 1034.9
(3) 		888.7
(0.4) 		725.1
(-2.5) 		722.5
(-2.5) 		760.7
(-1.9) 		697
(-3) 		338
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183845_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15985
Sequence Type Exemplar sequence
Representative Public ID C54G7.2 NCBI
Target Description C54G7.2 /REP_DB=WormBase Gene ID /WP=CE04270 /TR=Q18856 /GB=AAA81391.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076536 NCBI Caenorhabditis elegans C54G7.2 (C54G7.2) mRNA, complete cds. 11/11 None
SNAP00000026244 ENSEMBL cdna:SNAP chromosome:CEL140:X:5520145:5522747:-1 11/11 None
GENEFINDER00000026252 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5520145:5522772:-1 11/11 None
C54G7.2.1 ENSEMBL cdna:known chromosome:CEL140:X:5519837:5522780:-1 gene:C54G7.2 11/11 None
C54G7.2.2 ENSEMBL cdna:known chromosome:CEL140:X:5519898:5522787:-1 gene:C54G7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5520144-5522772(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54G7.2
Entrez Gene 180824 Entrez gene
SwissProt Q18856 EMBL-EBI
WormBase CE04270 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259683_AT membrane bound O-acyl transferase (MBOAT) family protein at
CANINE:1593498_AT similar to O-acyltransferase (membrane bound) domain containing 2 cfa
CANINE_2:CFA.13467.1.A1_S_AT similar to O-acyltransferase (membrane bound) domain containing 2 cfa
DROSOPHILA_2:1626170_AT dm
DROSGENOME1:146917_AT dm
HU35KSUBB:RC_H61476_S_AT O-acyltransferase (membrane bound) domain containing 2 hs
HU35KSUBC:RC_H28581_AT O-acyltransferase (membrane bound) domain containing 2 hs
HU35KSUBD:RC_H75644_AT O-acyltransferase (membrane bound) domain containing 2 hs
HU35KSUBD:RC_AA449227_AT O-acyltransferase (membrane bound) domain containing 2 hs
U133_X3P:HS.15641.0.A1_3P_X_AT O-acyltransferase (membrane bound) domain containing 2 hs
U133_X3P:HS.15641.0.A1_3P_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U133_PLUS_2:226726_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U133B:226726_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U95B:42065_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U95B:58288_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U95E:78009_R_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U133_PLUS_2:213288_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U133A_2:213288_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U133A:213288_AT O-acyltransferase (membrane bound) domain containing 2 hs
HU35KSUBC:RC_AA504806_AT O-acyltransferase (membrane bound) domain containing 2 hs
U133_X3P:HS.90797.0.S1_3P_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U95AV2:38262_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U95D:80642_AT O-acyltransferase (membrane bound) domain containing 2 hs
HG-U95D:85721_R_AT O-acyltransferase (membrane bound) domain containing 2 hs
MG-U74BV2:115774_AT O-acyltransferase (membrane bound) domain containing 2 mm
MG-U74BV2:110078_AT O-acyltransferase (membrane bound) domain containing 2 mm
MOE430A:1425029_A_AT O-acyltransferase (membrane bound) domain containing 2 mm
MOUSE430A_2:1425029_A_AT O-acyltransferase (membrane bound) domain containing 2 mm
MOUSE430_2:1425029_A_AT O-acyltransferase (membrane bound) domain containing 2 mm
MG-U74BV2:105653_AT O-acyltransferase (membrane bound) domain containing 2 (Oact2), mRNA mm
RAE230B:1379075_AT O-acyltransferase (membrane bound) domain containing 2 (predicted) rn
RAT230_2:1379075_AT O-acyltransferase (membrane bound) domain containing 2 (predicted) rn
RAE230B:1392943_AT O-acyltransferase (membrane bound) domain containing 2 (predicted) rn
RAT230_2:1392943_AT O-acyltransferase (membrane bound) domain containing 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA81391 Hypothetical protein C54G7.2 [Caenorhabditis elegans] ref|NP_508937.1| C54G7.2 [Caenorhabditis elegans] 0.0
blast CAE68838 Hypothetical protein CBG14799 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 1.6E-88
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 1.6E-88
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508937.1 7 27-44,57-78,93-115,261-283,359-381,401-423,438-456
C54G7.2.1 7 27-44,57-78,93-115,261-283,359-381,401-423,438-456
C54G7.2.2 7 27-44,57-78,93-115,261-283,359-381,401-423,438-456
SNAP00000026244 6 46-65,162-184,204-226,302-324,344-366,381-399
GENEFINDER00000026252 7 27-44,57-78,93-115,261-283,359-381,401-423,438-456
Sequence
Target Sequence 
>C. ELEGANS:183845_S_AT
gaagctctgcaccaatgtacttccatatcaagtcgagatggctcaaagcttgaaggaaac
acttgacgggtggaacattcaaactggtttctggctccgaaaagttggatacgaacgtgc
tcccaaatcaattcgtaccgttgcaacctacaccttatctgctgtttggcacggagtttc
gatcggttactacatggccttcttcacatgcgggctctttacggtggctgctcaaacctt
ccgtcgctcaatgcgctggagattcctggacgatcacaataagaagtttgcctacgatat
tttctcgttcatcatcagtaaaatcgctcttgcctacgccacctactcctttgtcactat
gcacatgtatccagcttacgacgttttgaagagagtctattttattccacacattgtcgc
atttgccgtcatctttgccttgccaaagttcttcaagccactcaaaaagccacagccaac
tactgtcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCTGCACCAATGTACTTCCA 413 343 927 Antisense
ATCAATTCGTACCGTTGCAACCTAC 37 25 1053 Antisense
TACACCTTATCTGCTGTTTGGCACG 264 641 1075 Antisense
TCGATCGGTTACTACATGGCCTTCT 311 603 1105 Antisense
TTCCGTCGCTCAATGCGCTGGAGAT 661 697 1165 Antisense
TCATCAGTAAAATCGCTCTTGCCTA 632 619 1238 Antisense
CTACTCCTTTGTCACTATGCACATG 47 227 1269 Antisense
GCACATGTATCCAGCTTACGACGTT 439 315 1287 Antisense
TATTCCACACATTGTCGCATTTGCC 287 665 1329 Antisense
TTGCCAAAGTTCTTCAAGCCACTCA 701 699 1366 Antisense
AAAGCCACAGCCAACTACTGTCGAG 187 125 1392 Antisense
Sequence Source Affymetrix Proprietary Database