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[183843_at]

Description R03A10.1 /REP_DB=WormBase Gene ID /WP=CE06207 /TR=Q21655 /GB=CAA93670.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_high_8_8 > 18      6grp_highest_nonorm > 90      6grp_total > 17      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 142.9
(3)
P 		60.4
(-3)
P 		88.4
(-1)
P 		89.1
(-0.9)
A 		83
B 93.8
(-0.3)
P 		116.4
(3)
P 		75.7
(-3)
P 		89.7
(-0.9)
P 		41
C 157.4
(3)
P 		137.2
(1.4)
P 		80.1
(-3)
P 		152.5
(2.6)
P 		77
avr 131.4
(3) 		104.7
(-0.2) 		81.4
(-3) 		110.4
(0.5) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 135.2
(0.1)
P 		129
(-0.3)
P 		158.7
(1.7)
P 		132
(-0.1)
P 		88.5
(-3)
P 		178.8
(3)
P 		90
B 204.8
(3)
P 		145.3
(-0.3)
P 		129.7
(-1.2)
P 		96.9
(-3)
P 		132.8
(-1)
P 		134.4
(-0.9)
P 		108
C 172.9
(3)
P 		111.3
(-0.4)
P 		65.4
(-3)
P 		136.4
(1)
P 		105.1
(-0.8)
P 		86
(-1.9)
P 		108
avr 171
(3) 		128.5
(-1.1) 		117.9
(-2.1) 		121.8
(-1.7) 		108.8
(-3) 		133.1
(-0.7) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 52
(3)
P 		13.1
(-3)
P 		23.1
(-1.4)
P 		13
(-3)
A 		39
B 29.9
(3)
P 		28.8
(2.5)
P 		17.5
(-3)
P 		19.1
(-2.2)
P 		12
C 52.1
(3)
P 		39.4
(0.1)
P 		27.9
(-2.5)
P 		25.7
(-3)
P 		26
avr 44.7
(3) 		27.1
(-1.2) 		22.8
(-2.2) 		19.3
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 24.9
(-3)
P 		45.9
(3)
P 		34.6
(-0.2)
P 		33.5
(-0.5)
P 		26.7
(-2.5)
P 		43.5
(2.3)
P 		21
B 71.2
(3)
P 		48.4
(-0)
P 		31.5
(-2.2)
P 		25.7
(-3)
P 		53.9
(0.7)
P 		50.1
(0.2)
P 		46
C 64.1
(3)
P 		33.9
(-0.8)
P 		16.7
(-3)
P 		27.4
(-1.6)
P 		34
(-0.8)
P 		28.8
(-1.5)
P 		47
avr 53.4
(3) 		42.7
(0.5) 		27.6
(-3) 		28.9
(-2.7) 		38.2
(-0.5) 		40.8
(0.1) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183843_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17504
Sequence Type Exemplar sequence
Representative Public ID R03A10.1 NCBI
Target Description R03A10.1 /REP_DB=WormBase Gene ID /WP=CE06207 /TR=Q21655 /GB=CAA93670.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078149 NCBI Caenorhabditis elegans R03A10.1 (R03A10.1) mRNA, complete cds. 11/11 None
SNAP00000023407 ENSEMBL cdna:SNAP chromosome:CEL140:X:15429928:15431032:-1 11/11 None
GENEFINDER00000023416 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15429928:15431032:-1 11/11 None
R03A10.1 ENSEMBL cdna:known chromosome:CEL140:X:15429928:15431032:-1 gene:R03A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15429927-15431032(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03A10.1
Entrez Gene 187532 Entrez gene
SwissProt Q21655 EMBL-EBI
WormBase CE06207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93670 Hypothetical protein R03A10.1 [Caenorhabditis elegans] ref|NP_510550.1| R03A10.1 [Caenorhabditis elegans] 1.0E-58
blast CAE63309 Hypothetical protein CBG07698 [Caenorhabditis briggsae] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:183843_AT
tcatcacagatggttcagctttgctttcgattccgatgagcagctctcaagcgtcggaga
cccttctcacaagtgcaaaacagtttagtcatgtggaacaagttatagacaatacggata
agcttctgcgagaaatcgaacagatggtagacggggtaaccaaaaatgctgaggatatgg
aaaaaggattggatattgtatgcgacgttcaagaatgtcttcaaaaggtggaacgtcaaa
actactacagcgcggtgcccaagtcattttctgccgacagtttttcatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCACAGATGGTTCAGCTTTGCT 199 621 65 Antisense
TGGTTCAGCTTTGCTTTCGATTCCG 482 551 75 Antisense
TTTCGATTCCGATGAGCAGCTCTCA 160 669 89 Antisense
TGAGCAGCTCTCAAGCGTCGGAGAC 283 569 101 Antisense
GAGACCCTTCTCACAAGTGCAAAAC 320 391 121 Antisense
GACAATACGGATAAGCTTCTGCGAG 710 363 172 Antisense
GACGGGGTAACCAAAAATGCTGAGG 45 375 214 Antisense
GATTGGATATTGTATGCGACGTTCA 614 435 251 Antisense
CGTCAAAACTACTACAGCGCGGTGC 165 245 298 Antisense
CCCAAGTCATTTTCTGCCGACAGTT 528 257 322 Antisense
TTTTCTGCCGACAGTTTTTCATCTT 481 677 331 Antisense
Sequence Source Affymetrix Proprietary Database