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[183842_s_at]

Description F58F9.1 /REP_DB=WormBase Gene ID /WP=CE07298 /TR=Q20993 /GB=AAC48087.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 13.7
(0.8)
A 		16.7
(3)
A 		8.7
(-3)
A 		14.5
(1.4)
A 		8
B 49.3
(3)
A 		14.2
(-2.4)
A 		23.9
(-0.9)
A 		10.2
(-3)
A 		39
C 37.4
(3)
A 		26.6
(0.5)
A 		11.6
(-3)
A 		37.6
(3)
A 		26
avr 33.5
(3) 		19.2
(-1.6) 		14.7
(-3) 		20.8
(-1.1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 25.7
(2.9)
A 		13.1
(-0.4)
A 		13
(-0.5)
A 		26.2
(3)
A 		9.1
(-1.5)
A 		3.3
(-3)
A 		23
B 11.2
(-1.7)
A 		11.6
(-1.5)
A 		17.1
(1.2)
A 		20.7
(3)
A 		16.8
(1.1)
A 		8.5
(-3)
A 		12
C 8.9
(-2.9)
A 		56.6
(3)
A 		10.6
(-2.7)
A 		25.7
(-0.8)
A 		9.5
(-2.8)
A 		7.9
(-3)
A 		49
avr 15.3
(-0.5) 		27.1
(3) 		13.6
(-1) 		24.2
(2.2) 		11.8
(-1.5) 		6.6
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5
(3)
A 		3.6
(0.1)
A 		2.3
(-2.6)
A 		2.1
(-3)
A 		3
B 15.7
(3)
A 		3.5
(-2.4)
A 		5.5
(-1.5)
A 		2.2
(-3)
A 		14
C 12.4
(3)
A 		7.6
(-0.5)
A 		4.1
(-3)
A 		6.3
(-1.4)
A 		8
avr 11
(3) 		4.9
(-1.9) 		4
(-2.6) 		3.5
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.7
(1)
A 		4.6
(0.9)
A 		2.8
(-0.9)
A 		6.6
(3)
A 		2.7
(-1)
A 		0.8
(-3)
A 		6
B 3.9
(-1.8)
A 		3.9
(-1.8)
A 		4.1
(-1.5)
A 		5.5
(0.8)
A 		6.8
(3)
A 		3.2
(-3)
A 		4
C 3.3
(-2.7)
A 		17.3
(3)
A 		2.7
(-3)
A 		5.2
(-1.9)
A 		3.1
(-2.8)
A 		2.6
(-3)
A 		15
avr 4
(-1.3) 		8.6
(3) 		3.2
(-2.1) 		5.8
(0.4) 		4.2
(-1.1) 		2.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183842_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11038
Sequence Type Exemplar sequence
Representative Public ID F58F9.1 NCBI
Target Description F58F9.1 /REP_DB=WormBase Gene ID /WP=CE07298 /TR=Q20993 /GB=AAC48087.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075868(11), NM_068543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075868 NCBI Caenorhabditis elegans F19G12.2 (F19G12.2) mRNA, complete cds. 11/11 A 
NM_068543 NCBI Caenorhabditis elegans F58F9.1 (F58F9.1) mRNA, complete cds. 11/11 None
SNAP00000041832 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6250315:6251247:1 11/11 None
SNAP00000018686 ENSEMBL cdna:SNAP chromosome:CEL140:X:1427769:1429106:1 11/11 None
GENEFINDER00000018692 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1427769:1429106:1 11/11 None
F58F9.1 ENSEMBL cdna:known chromosome:CEL140:IV:6250315:6251247:1 gene:F58F9.1 11/11 None
F19G12.2 ENSEMBL cdna:known chromosome:CEL140:X:1427769:1430866:1 gene:F19G12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6250320-6251253(+) 100.0 100.0
chrX:1428173-1429106(+) 99.68 99.68
Public Domain and Genome References
Gene Title

Ensembl F58F9.1
F19G12.2
Entrez Gene 184692 Entrez gene
186533 Entrez gene
SwissProt Q19599 EMBL-EBI
Q20993 EMBL-EBI
WormBase CE07085 Wormbase
CE07298 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9186 deoxyribonucleoside diphosphate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4748 ribonucleoside-diphosphate reductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24065 Hypothetical protein F19G12.2 [Caenorhabditis elegans] ref|NP_508269.1| F19G12.2 [Caenorhabditis elegans] 0.0
blast AAK84536 Hypothetical protein F54H12.2 [Caenorhabditis elegans] ref|NP_498735.1| F54H12.2 [Caenorhabditis elegans] sp|P34456|YMD2_CAEEL Hypothetical protein F54H12.2 in chromosome III 0.0
blast AAC48087 Hypothetical protein F58F9.1 [Caenorhabditis elegans] ref|NP_500944.1| F58F9.1 [Caenorhabditis elegans] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR000358 EMBL-EBI Ribonucleotide reductase 8.8E-45
Pfam IPR000358 EMBL-EBI Ribonucleotide reductase 2.1E-22
Sequence
Target Sequence 
>C. ELEGANS:183842_S_AT
tcttcacaggtgcgcagtttctatatagagtctggacgtcttgacgcgccggctaacaca
ctcttcacaagcaagatgccccgtcgaattttcattggtcttgttgattctgacgcgtac
aatggctcttatgataaatcaccattcaatttcaaaccacatggtatatctgatatacat
gttgattattgtggaatgacactccccggccgcccttttgccttagattttgacagaaac
aagtttatggaggcatacattcaacttcaagaaaccctcggtcactcgcgaagcaattcc
acatgtaattctattagcacccaaatgtttaaagaaggcggatatacgatttttggtttt
gaattgagtcccgttgctcaggacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCACAGGTGCGCAGTTTCTATA 5 617 400 Antisense
TAGAGTCTGGACGTCTTGACGCGCC 283 651 425 Antisense
CGGCTAACACACTCTTCACAAGCAA 683 241 449 Antisense
TTCACAAGCAAGATGCCCCGTCGAA 539 685 463 Antisense
GCCCCGTCGAATTTTCATTGGTCTT 657 281 477 Antisense
GGTCTTGTTGATTCTGACGCGTACA 171 503 496 Antisense
TTATTGTGGAATGACACTCCCCGGC 683 673 585 Antisense
CGCCCTTTTGCCTTAGATTTTGACA 555 235 610 Antisense
TCAACTTCAAGAAACCCTCGGTCAC 85 629 660 Antisense
TCACTCGCGAAGCAATTCCACATGT 625 625 681 Antisense
ATTGAGTCCCGTTGCTCAGGACACT 518 3 762 Antisense
Sequence Source Affymetrix Proprietary Database