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[183841_at]

Description C50F7.9 /REP_DB=WormBase Gene ID /WP=CE04247 /TR=Q18754 /GB=AAA83305.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 24.7
(-2.4)
A 		30.7
(-0.5)
A 		22.7
(-3)
A 		41.8
(3)
A 		19
B 23
(0.8)
A 		4.1
(-3)
A 		33.9
(3)
A 		18.1
(-0.2)
A 		30
C 9.3
(-2.5)
A 		4.8
(-3)
A 		19.3
(-1.4)
A 		59.5
(3)
A 		55
avr 19
(-1.7) 		13.2
(-3) 		25.3
(-0.3) 		39.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 37.7
(3)
A 		26.5
(1.1)
A 		4.8
(-2.4)
A 		1.4
(-3)
A 		12.4
(-1.2)
A 		1.5
(-3)
A 		36
B 18.9
(3)
A 		3.6
(-3)
A 		4.5
(-2.6)
A 		4.4
(-2.7)
A 		10.4
(-0.3)
A 		9.8
(-0.6)
A 		15
C 4.7
(-2.6)
A 		34.9
(3)
A 		22.8
(0.8)
A 		5.5
(-2.5)
A 		2.6
(-3)
A 		3.6
(-2.8)
A 		32
avr 20.4
(2.6) 		21.7
(3) 		10.7
(-0.7) 		3.8
(-3) 		8.5
(-1.4) 		5
(-2.6) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9
(3)
A 		6.7
(-1.5)
A 		5.9
(-3)
A 		6.1
(-2.6)
A 		3
B 7.3
(2.6)
A 		1
(-3)
A 		7.8
(3)
A 		3.9
(-0.4)
A 		7
C 3.1
(-1.8)
A 		1.4
(-3)
A 		6.7
(0.7)
A 		10
(3)
A 		9
avr 6.5
(2.5) 		3
(-3) 		6.8
(3) 		6.7
(2.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7
(1.4)
A 		9.4
(3)
A 		1.1
(-2.5)
A 		0.4
(-3)
A 		3.7
(-0.8)
A 		0.4
(-3)
A 		9
B 6.6
(3)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		4.2
(0.4)
A 		3.7
(-0.2)
A 		6
C 1.7
(-2.5)
A 		10.7
(3)
A 		5.8
(0)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		1.2
(-2.8)
A 		10
avr 5.1
(1.1) 		7.1
(3) 		2.7
(-1.3) 		0.9
(-3) 		2.9
(-1.1) 		1.8
(-2.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183841_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9428
Sequence Type Exemplar sequence
Representative Public ID C50F7.9 NCBI
Target Description C50F7.9 /REP_DB=WormBase Gene ID /WP=CE04247 /TR=Q18754 /GB=AAA83305.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068866 NCBI Caenorhabditis elegans C50F7.9 (C50F7.9) mRNA, complete cds. 11/11 None
SNAP00000024187 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7728627:7731566:-1 11/11 None
GENEFINDER00000024200 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7730652:7731566:-1 11/11 None
C50F7.9 ENSEMBL cdna:known chromosome:CEL140:IV:7730652:7732043:-1 gene:C50F7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7730657-7732049(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50F7.9
Entrez Gene 183685 Entrez gene
SwissProt Q18754 EMBL-EBI
WormBase CE04247 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83305 Hypothetical protein C50F7.9 [Caenorhabditis elegans] ref|NP_501267.1| C50F7.9 [Caenorhabditis elegans] 1.0E-174
blast CAE60780 Hypothetical protein CBG04469 [Caenorhabditis briggsae] 1.0E-140
blast AAA83305 Hypothetical protein C50F7.9 [Caenorhabditis elegans] ref|NP_501267.1| C50F7.9 [Caenorhabditis elegans] 1.0E-139
blast AAA83305 Hypothetical protein C50F7.9 [Caenorhabditis elegans] ref|NP_501267.1| C50F7.9 [Caenorhabditis elegans] 1.0E-134
blast CAE60780 Hypothetical protein CBG04469 [Caenorhabditis briggsae] 1.0E-117
blast CAE60780 Hypothetical protein CBG04469 [Caenorhabditis briggsae] 1.0E-113
blast CAE57012 Hypothetical protein CBG24884 [Caenorhabditis briggsae] 1.0E-105
blast CAE57012 Hypothetical protein CBG24884 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501267.1 1 9-31
C50F7.9 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:183841_AT
ttatggctcaattggcttgtcgataataatgagcacatgtgtaactcaattttcattcac
aattcaaaaagtattgcaatggaaagagagtttaaaagatacaacaggaaatgtgtgata
tattctttgagtgataagcatacggaaacctcacactatcaagatcctcgatatagtgtc
ctcacattaaaacaaaatgtgagctcacaagcacggcatttaggatggggagttgatcat
tatgctcgagattcgaatgcagttgatttgacatacttcacagttgtacaagtgcataaa
ctacgttacgattcagttaatatattttacgatggaagtcaacatattaaagctctgttc
accaaatctgcattcgatgaggcaaatctggtatcatgtcagttcaatatcctatacgat
agaccaaaaggccgtctagctcgtcgagaattccgtgcaacatggaagaagcttctttat
gatagacggtattttgtggccagtgtacgaaggatcagtggaagtaatgataagatatct
attcttcttcttaatatttgcgatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGGCTCAATTGGCTTGTCGATA 153 681 289 Antisense
GAAACCTCACACTATCAAGATCCTC 447 359 433 Antisense
AGATCCTCGATATAGTGTCCTCACA 523 67 450 Antisense
GAGCTCACAAGCACGGCATTTAGGA 325 387 489 Antisense
GATTTGACATACTTCACAGTTGTAC 51 427 553 Antisense
AAAGCTCTGTTCACCAAATCTGCAT 71 125 637 Antisense
GGTATCATGTCAGTTCAATATCCTA 410 505 678 Antisense
AGACCAAAAGGCCGTCTAGCTCGTC 81 71 709 Antisense
TAGCTCGTCGAGAATTCCGTGCAAC 89 651 725 Antisense
TAGACGGTATTTTGTGGCCAGTGTA 662 651 771 Antisense
TCTTCTTCTTAATATTTGCGATCCA 220 617 831 Antisense
Sequence Source Affymetrix Proprietary Database