[Home] | [Total List]

[183840_at]

Description ZK783.4 /REP_DB=WormBase Gene ID /WP=CE18461 /TR=Q23590 /GB=AAC24421.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_high_8_8 > 27      6grp_highest_nonorm > 80      6grp_total > 34      4grp_total > 36      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 283.9
(3)
P 		272
(0.2)
P 		258.3
(-3)
P 		266.6
(-1.1)
M 		26
B 254.4
(-2.7)
P 		361.9
(3)
M 		249.6
(-3)
P 		296.5
(-0.5)
P 		112
C 314.6
(3)
P 		293.5
(1.8)
P 		207.6
(-3)
P 		243.3
(-1)
P 		107
avr 284.3
(0.9) 		309.1
(3) 		238.5
(-3) 		268.8
(-0.4) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 322
(3)
P 		302
(2.2)
P 		226.4
(-0.8)
P 		232.1
(-0.6)
P 		171.4
(-3)
P 		243.1
(-0.1)
P 		151
B 312
(3)
P 		200.8
(-1)
P 		262.8
(1.3)
P 		217.9
(-0.3)
P 		143.2
(-3)
P 		170.3
(-2)
P 		169
C 256.8
(0.3)
P 		209.1
(-1.7)
P 		322.2
(3)
P 		239.7
(-0.4)
P 		194.9
(-2.3)
P 		177.9
(-3)
P 		144
avr 296.9
(3) 		237.3
(0.2) 		270.5
(1.8) 		229.9
(-0.2) 		169.8
(-3) 		197.1
(-1.7) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 103.4
(3)
P 		59
(-1.1)
P 		67.5
(-0.3)
P 		39
(-3)
M 		64
B 81.1
(1.4)
P 		89.4
(3)
M 		57.8
(-3)
P 		63.2
(-2)
P 		32
C 104.1
(3)
P 		84.4
(1.1)
P 		72.3
(-0)
P 		41
(-3)
P 		63
avr 96.2
(3) 		77.6
(0.7) 		65.9
(-0.7) 		47.7
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 59.4
(-2)
P 		107.4
(3)
P 		49.3
(-3)
P 		58.9
(-2)
P 		51.7
(-2.8)
P 		59.2
(-2)
P 		58
B 108.6
(3)
P 		66.8
(-1.9)
P 		63.8
(-2.3)
P 		57.7
(-3)
P 		58.2
(-2.9)
P 		63.5
(-2.3)
P 		51
C 95.2
(3)
P 		63.8
(-1)
P 		82
(1.3)
P 		48.2
(-3)
P 		63.1
(-1.1)
P 		59.5
(-1.6)
P 		47
avr 87.7
(3) 		79.3
(1.5) 		65
(-1.2) 		54.9
(-3) 		57.7
(-2.5) 		60.7
(-1.9) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183840_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6203
Sequence Type Exemplar sequence
Representative Public ID ZK783.4 NCBI
Target Description ZK783.4 /REP_DB=WormBase Gene ID /WP=CE18461 /TR=Q23590 /GB=AAC24421.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066272
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000009366 ENSEMBL cdna:SNAP chromosome:CEL140:III:7650738:7655928:-1 None
NM_066272 NCBI Caenorhabditis elegans FLecTin family member (flt-1) (flt-1) mRNA, complete cds. None
GENEFINDER00000009367 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7650738:7655955:-1 None
ZK783.4 ENSEMBL cdna:known chromosome:CEL140:III:7650490:7655955:-1 gene:ZK783.4 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7649088-7655926(-) 99.11 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flt-1
Ensembl ZK783.4
Entrez Gene 176078 Entrez gene
SwissProt Q23590 EMBL-EBI
WormBase CE34152 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604923_AT similar to Bromodomain adjacent to zinc finger domain 2B (hWALp4) cfa
CANINE:1591981_AT similar to Bromodomain adjacent to zinc finger domain 2B (hWALp4) cfa
CANINE_2:CFA.10328.1.A1_S_AT similar to Bromodomain adjacent to zinc finger domain 2B (hWALp4) cfa
CANINE_2:CFA.2477.1.S1_AT similar to Bromodomain adjacent to zinc finger domain 2B (hWALp4) cfa
CANINE_2:CFAAFFX.14872.1.S1_AT similar to Bromodomain adjacent to zinc finger domain 2B (hWALp4) cfa
CHICKEN:GGA.13386.1.S1_S_AT bromodomain adjacent to zinc finger domain, 2B gga
CHICKEN:GGA.4033.1.S1_AT bromodomain adjacent to zinc finger domain, 2B gga
CHICKEN:GGA.4033.1.S2_AT bromodomain adjacent to zinc finger domain, 2B gga
CHICKEN:GGA.4033.2.S1_A_AT bromodomain adjacent to zinc finger domain, 2B gga
HG-U133A:203080_S_AT bromodomain adjacent to zinc finger domain, 2B hs
HG-U133_PLUS_2:203080_S_AT bromodomain adjacent to zinc finger domain, 2B hs
HG-FOCUS:203080_S_AT bromodomain adjacent to zinc finger domain, 2B hs
HG-U133A_2:203080_S_AT bromodomain adjacent to zinc finger domain, 2B hs
HU35KSUBB:RC_T41078_AT bromodomain adjacent to zinc finger domain, 2B hs
U133_X3P:G7304922_3P_A_AT bromodomain adjacent to zinc finger domain, 2B hs
HG-U95AV2:37915_AT bromodomain adjacent to zinc finger domain, 2B hs
HG-U95E:86462_AT bromodomain adjacent to zinc finger domain, 2B hs
HG-U95E:88632_AT bromodomain adjacent to zinc finger domain, 2B hs
HG-U95D:78726_AT Bromodomain adjacent to zinc finger domain, 2B hs
HG-U95D:91717_AT Bromodomain adjacent to zinc finger domain, 2B hs
HU35KSUBC:RC_D20464_AT Bromodomain adjacent to zinc finger domain, 2B hs
HU35KSUBC:RC_N62635_AT Bromodomain adjacent to zinc finger domain, 2B hs
MOUSE430_2:1442971_AT RIKEN cDNA 5830435C13 gene mm
MOE430B:1442971_AT RIKEN cDNA 5830435C13 gene mm
MU11KSUBA:AA209736_AT RIKEN cDNA 5830435C13 gene mm
MG-U74BV2:117263_AT RIKEN cDNA 5830435C13 gene mm
MG-U74CV2:130578_AT RIKEN cDNA 5830435C13 gene mm
MG-U74BV2:163906_AT RIKEN cDNA 5830435C13 gene mm
MOE430A:1435240_AT RIKEN cDNA 5830435C13 gene mm
MOUSE430A_2:1435240_AT RIKEN cDNA 5830435C13 gene mm
MOUSE430_2:1435240_AT RIKEN cDNA 5830435C13 gene mm
MOE430B:1445048_AT RIKEN cDNA 5830435C13 gene mm
MOUSE430_2:1445048_AT RIKEN cDNA 5830435C13 gene mm
MOE430B:1440984_AT RIKEN cDNA 5830435C13 gene mm
MOUSE430_2:1440984_AT RIKEN cDNA 5830435C13 gene mm
MOE430B:1448007_AT RIKEN cDNA 5830435C13 gene mm
MOUSE430_2:1448007_AT RIKEN cDNA 5830435C13 gene mm
MU19KSUBC:TC41507_AT RIKEN cDNA 5830435C13 gene mm
MU19KSUBA:TC25153_AT MKIAA1476 protein mm
RT-U34:RC_AI012051_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
RG-U34A:RC_AI012051_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
RG-U34B:RC_AI045761_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
RG-U34C:RC_AI227883_F_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
RAE230A:1376533_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
RAT230_2:1376533_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
RAE230A:1373430_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
RAT230_2:1373430_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
RAE230B:1392421_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
RAT230_2:1392421_AT bromodomain adjacent to zinc finger domain, 2B (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24421 Flectin protein 1 [Caenorhabditis elegans] ref|NP_498673.2| FLecTin family member (flt-1) [Caenorhabditis elegans] 0.0
blast CAE57173 Hypothetical protein CBG00008 [Caenorhabditis briggsae] 0.0
blast XP_856656 PREDICTED: similar to Bromodomain adjacent to zinc finger domain 2B (hWALp4) isoform 7 [Canis familiaris] 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 2.3E-18
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 0.0061
Pfam IPR001739 EMBL-EBI Methyl-CpG binding 1.2E-29
Pfam IPR004022 EMBL-EBI DDT domain 9.7E-26
Pfam IPR001487 EMBL-EBI Bromodomain 1.3E-33
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 2.3E-18
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 0.0061
Pfam IPR001739 EMBL-EBI Methyl-CpG binding 1.2E-29
Pfam IPR004022 EMBL-EBI DDT domain 9.7E-26
Pfam IPR001487 EMBL-EBI Bromodomain 1.3E-33
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 2.3E-18
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 0.0061
Pfam IPR001487 EMBL-EBI Bromodomain 1.3E-33
Sequence
Target Sequence 
>C. ELEGANS:183840_AT
tggagcaattgcaatcggcgttcataatcaacaaaacggagtcaaaggaaatctgaagag
aaaattggaggttccaagtattggtggtcttccaaaaaatatgaataaggagttgtgtca
actcatgttggatgaactcgtcgtccaagcaaatgctttgccatttttggagcctgtcaa
tccaaaattggttcctggatataaaatgattatttcaaaaccaatggacttgaagacaat
tcgacagaagaatgagaaacttatatacgagactccagaagattttgctgaagacataga
gctcatgttcgccaactgtcgtcaattcaacattgatcactcagaaattggacgtgctgg
aatcagtttgcacaagtttttccaaaaacgttggaagcagctgaaatacaactttacaaa
aagactcagacgccttcatccaaagcagtacccgattcttcatcgccatacatgttctga
aacactttcggagcgactggtggcttttgctgaagttgctggatttgctgaacaggctcg
gactct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCAATTGCAATCGGCGTTCAT 484 549 3699 Antisense
TGAACTCGTCGTCCAAGCAAATGCT 694 571 3831 Antisense
GCTTTGCCATTTTTGGAGCCTGTCA 309 303 3853 Antisense
AGACATAGAGCTCATGTTCGCCAAC 546 71 3990 Antisense
GTTCGCCAACTGTCGTCAATTCAAC 663 441 4005 Antisense
TCAGACGCCTTCATCCAAAGCAGTA 157 625 4124 Antisense
CCAAAGCAGTACCCGATTCTTCATC 418 275 4138 Antisense
GATTCTTCATCGCCATACATGTTCT 607 431 4152 Antisense
AACACTTTCGGAGCGACTGGTGGCT 216 127 4179 Antisense
GACTGGTGGCTTTTGCTGAAGTTGC 531 373 4193 Antisense
GATTTGCTGAACAGGCTCGGACTCT 579 427 4220 Antisense
Sequence Source Affymetrix Proprietary Database