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[183839_at]

Description C03E10.3 /REP_DB=WormBase Gene ID /WP=CE15583 /TR=O17559 /GB=CAB03822.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 122.1
(-1.1)
P 		76
(-2.5)
P 		60.4
(-3)
A 		258.4
(3)
P 		198
B 70.8
(-2.5)
P 		101.1
(-1.1)
P 		60.5
(-3)
A 		191.8
(3)
P 		131
C 88.2
(-1.3)
P 		110.8
(-0.6)
P 		30.1
(-3)
A 		235.4
(3)
P 		205
avr 93.7
(-1.5) 		96
(-1.5) 		50.3
(-3) 		228.5
(3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 62.2
(-0.2)
A 		94.8
(3)
P 		70.8
(0.6)
A 		69.1
(0.5)
A 		76.2
(1.2)
M 		33.9
(-3)
A 		61
B 87.3
(3)
M 		60.3
(0.5)
A 		23.4
(-3)
A 		72.2
(1.6)
M 		78
(2.1)
P 		66.6
(1.1)
P 		64
C 88.1
(-0)
P 		123.8
(3)
P 		94.4
(0.5)
A 		75.5
(-1.1)
A 		53.1
(-3)
A 		70.7
(-1.5)
P 		71
avr 79.2
(0.7) 		93
(3) 		62.9
(-2) 		72.3
(-0.5) 		69.1
(-1) 		57.1
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 44.5
(3)
P 		16.5
(-2.9)
P 		15.8
(-3)
A 		37.8
(1.6)
P 		29
B 22.6
(-1.1)
P 		25
(-0.5)
P 		14
(-3)
A 		40.9
(3)
P 		27
C 29.2
(0.8)
P 		31.9
(1.4)
P 		10.5
(-3)
A 		39.7
(3)
P 		29
avr 32.1
(1.3) 		24.5
(-0.4) 		13.4
(-3) 		39.5
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 11.5
(-2.2)
A 		33.7
(3)
P 		15.4
(-1.3)
A 		17.5
(-0.8)
A 		23
(0.5)
M 		8.2
(-3)
A 		26
B 30.4
(2.7)
M 		20.1
(0.3)
A 		5.7
(-3)
A 		19.1
(0.1)
M 		31.7
(3)
P 		24.8
(1.4)
P 		26
C 32.6
(1.6)
P 		37.8
(3)
P 		24
(-0.7)
A 		15.2
(-3)
A 		17.2
(-2.5)
A 		23.7
(-0.7)
P 		23
avr 24.8
(0.8) 		30.5
(3) 		15
(-3) 		17.3
(-2.1) 		24
(0.5) 		18.9
(-1.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12634
Sequence Type Exemplar sequence
Representative Public ID C03E10.3 NCBI
Target Description C03E10.3 /REP_DB=WormBase Gene ID /WP=CE15583 /TR=O17559 /GB=CAB03822.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073464 NCBI Caenorhabditis elegans C03E10.3 (C03E10.3) mRNA, complete cds. 11/11 None
SNAP00000008151 ENSEMBL cdna:SNAP chromosome:CEL140:V:11289594:11290814:1 9/11 None
GENEFINDER00000008160 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11289594:11291401:1 9/11 None
C03E10.3 ENSEMBL cdna:known chromosome:CEL140:V:11289594:11291072:1 gene:C03E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11289593-11291072(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03E10.3
Entrez Gene 182163 Entrez gene
SwissProt O17559 EMBL-EBI
WormBase CE15583 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03822 Hypothetical protein C03E10.3 [Caenorhabditis elegans] ref|NP_505865.1| C03E10.3 [Caenorhabditis elegans] 0.0
blast CAB03822 Hypothetical protein C03E10.3 [Caenorhabditis elegans] ref|NP_505865.1| C03E10.3 [Caenorhabditis elegans] 1.0E-174
blast CAB03822 Hypothetical protein C03E10.3 [Caenorhabditis elegans] ref|NP_505865.1| C03E10.3 [Caenorhabditis elegans] 1.0E-154
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505865.1 9 5-25,46-68,83-105,117-139,149-166,196-218,228-250,318-340,363-385
C03E10.3 9 5-25,46-68,83-105,117-139,149-166,196-218,228-250,318-340,363-385
SNAP00000008151 6 7-28,43-65,78-97,117-136,169-191,201-223
GENEFINDER00000008160 7 5-25,46-68,83-105,117-139,149-166,196-218,228-250
Sequence
Target Sequence 
>C. ELEGANS:183839_AT
ctacaacacgttttctgattcttctctgctggatcatcttcatctacattccatcggatc
ttacagaaccattccgttcttttgccactgtaatctttgaaattctaaaaagcatcgaag
cgattgtgttcccttccgtgtttcttcattttcatgatcgcattgttcgtcatattttct
acctggcgacaaaagacctgaaagaccctccaactcttgaaccaaggccaagatttgatg
gatccaaacttcttgctgaaatgtctcaaacggaaacaattgattcaatgaagaaaagtt
gggagaaacaccacaaaaagttcatgaaggataacaaacgaaataaaatgctgagtgcac
gtaatccggtttcctgttttcttctgaaagtcattaaaatgttttttaatattcaattta
gagaaccatctttctcaaacaattgttttttaaacatattatatttaagctccaatcaaa
taacatatatttacctctatctcttttttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACAACACGTTTTCTGATTCTTCT 610 225 614 Antisense
TGATTCTTCTCTGCTGGATCATCTT 178 565 629 Antisense
TCATCTACATTCCATCGGATCTTAC 525 619 653 Antisense
ACAGAACCATTCCGTTCTTTTGCCA 369 105 676 Antisense
GTTCTTTTGCCACTGTAATCTTTGA 602 441 689 Antisense
GCATCGAAGCGATTGTGTTCCCTTC 497 309 725 Antisense
GTTCGTCATATTTTCTACCTGGCGA 30 443 778 Antisense
GACAAAAGACCTGAAAGACCCTCCA 565 361 801 Antisense
CCCTCCAACTCTTGAACCAAGGCCA 424 259 819 Antisense
CTGAGTGCACGTAATCCGGTTTCCT 120 237 964 Antisense
TATTTACCTCTATCTCTTTTTTGTC 175 663 1101 Antisense
Sequence Source Affymetrix Proprietary Database