[Home] | [Total List]

[183838_s_at]

Description W06D12.5 /REP_DB=WormBase Gene ID /WP=CE16553 /TR=O45894 /GB=CAB04926.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 56      4grp_total > 03      6grp_cgc > 36      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 120
(-2.5)
P 		109.5
(-2.9)
P 		108.4
(-3)
P 		235.4
(3)
P 		127
B 104.3
(-2)
P 		115.1
(-1.6)
P 		82
(-3)
P 		222.4
(3)
P 		140
C 129.6
(-2.4)
P 		119.8
(-2.7)
P 		113.1
(-3)
P 		267.6
(3)
P 		155
avr 118
(-2.3) 		114.8
(-2.4) 		101.2
(-3) 		241.8
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 113.8
(1.6)
P 		115
(1.7)
P 		91.4
(-0.4)
P 		94.6
(-0.1)
P 		60.5
(-3)
P 		130.7
(3)
P 		70
B 89.1
(-0.9)
P 		105.8
(0.3)
P 		121.8
(1.5)
P 		115.7
(1.1)
P 		61.8
(-3)
P 		141.1
(3)
P 		79
C 81.7
(-2)
P 		119.6
(2.2)
P 		124.9
(2.8)
P 		121.6
(2.5)
P 		72.8
(-3)
P 		126.4
(3)
P 		54
avr 94.9
(-0.4) 		113.5
(1.3) 		112.7
(1.2) 		110.6
(1) 		65
(-3) 		132.7
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 43.7
(3)
P 		23.8
(-3)
P 		28.3
(-1.6)
P 		34.5
(0.2)
P 		20
B 33.3
(0)
P 		28.4
(-1)
P 		19
(-3)
P 		47.4
(3)
P 		28
C 42.9
(1.8)
P 		34.4
(-3)
P 		39.4
(-0.2)
P 		45.1
(3)
P 		11
avr 40
(2) 		28.9
(-3) 		28.9
(-3) 		42.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 21
(-2.3)
P 		40.9
(3)
P 		19.9
(-2.6)
P 		24
(-1.5)
P 		18.2
(-3)
P 		31.8
(0.6)
P 		23
B 31
(-1.7)
P 		35.2
(-0.8)
P 		29.6
(-2)
P 		30.7
(-1.8)
P 		25.1
(-3)
P 		52.6
(3)
P 		28
C 30.3
(-0.9)
P 		36.5
(1.1)
P 		31.8
(-0.4)
P 		24.5
(-2.7)
P 		23.6
(-3)
P 		42.3
(3)
P 		19
avr 27.4
(-1.5) 		37.5
(1.6) 		27.1
(-1.6) 		26.4
(-1.8) 		22.3
(-3) 		42.2
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183838_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13510
Sequence Type Exemplar sequence
Representative Public ID W06D12.5 NCBI
Target Description W06D12.5 /REP_DB=WormBase Gene ID /WP=CE16553 /TR=O45894 /GB=CAB04926.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075079 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-33) (twk-33) mRNA, complete cds. 11/11 None
SNAP00000010706 ENSEMBL cdna:SNAP chromosome:CEL140:V:17712657:17716801:-1 11/11 None
GENEFINDER00000010715 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17712514:17717173:-1 11/11 None
W06D12.5 ENSEMBL cdna:known chromosome:CEL140:V:17712657:17716842:-1 gene:W06D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17712656-17716842(-) 98.95 100.0
Public Domain and Genome References
Gene Title
Gene Symbol twk-33
Ensembl W06D12.5
Entrez Gene 180161 Entrez gene
SwissProt O45894 EMBL-EBI
WormBase CE16553 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5267 potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04926 Hypothetical protein W06D12.5 [Caenorhabditis elegans] ref|NP_507480.1| TWiK family of potassium channels family member (twk-33) [Caenorhabditis elegans] 0.0
blast CAE61731 Hypothetical protein CBG05682 [Caenorhabditis briggsae] 0.0
blast CAE61075 Hypothetical protein CBG04825 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507480.1 5 212-234,339-361,400-422,432-454,475-492
W06D12.5 5 212-234,339-361,400-422,432-454,475-492
SNAP00000010706 5 215-237,342-364,403-425,435-457,464-481
GENEFINDER00000010715 5 216-238,343-365,404-426,436-458,465-482
Sequence
Target Sequence 
>C. ELEGANS:183838_S_AT
ctaagtgggcctgaacctggaactggaatggatatgtttctttgcttctacttctcgttc
atttctctatcgactattggtttgggagatattatgccgaataacgcaacggtagggaat
aatagaaatatctatgaaaatgaaaaaattaagtttgctccaataatttctatcatattt
ttcttcggaatggctgtgacaaaagttgtcaatcgaaatacatttattgcagtcgaaaat
ggaatttttggagctttcactctggtggagaacaagctggacgcaattgtgacgagaagc
agtgccagtgtaaagccagaggaccgaccgtctactccaaaggtgcagagagctttgagt
gtcgatgcagggtccgaggttcaggacgagacgccgaacgagattctgaacaacctcacg
gtccgctctatcgccacattcatgaaatccaacgcggatatctacggaggaggcttcgga
agggtacaactgagaagaggagatcttatacactcggatagccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAAGTGGGCCTGAACCTGGAACTG 419 1 1288 Antisense
GATATGTTTCTTTGCTTCTACTTCT 659 425 1318 Antisense
TACTTCTCGTTCATTTCTCTATCGA 290 645 1336 Antisense
TGGAGCTTTCACTCTGGTGGAGAAC 649 547 1536 Antisense
GTGTAAAGCCAGAGGACCGACCGTC 489 483 1595 Antisense
GACCGTCTACTCCAAAGGTGCAGAG 566 381 1613 Antisense
GAGCTTTGAGTGTCGATGCAGGGTC 223 389 1637 Antisense
TCCGAGGTTCAGGACGAGACGCCGA 124 595 1660 Antisense
GAGATTCTGAACAACCTCACGGTCC 307 397 1687 Antisense
AACGCGGATATCTACGGAGGAGGCT 65 145 1738 Antisense
GATCTTATACACTCGGATAGCCAGA 541 419 1789 Antisense
Sequence Source Affymetrix Proprietary Database